View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_high_7 (Length: 442)
Name: NF5541_high_7
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 40881203 - 40881627
Alignment:
| Q |
1 |
attcaatttgcattcatggtcgtaggtcttggtgctaccatcaatgttgctaaaccgaaacccggttcttctgttgctatctttggacttggagctgttg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40881203 |
attcaatttgcattcatggtcttaggtcttggtgctaccatcaatgttgctaaaccgaaacccggttcttctgttgctatctttggacttggagctgttg |
40881302 |
T |
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| Q |
101 |
gccttgctgtatgttactttcataccatgagtgtgtgtgtttgtgatactgttatcatatatagcagcaactaaaaagattcaataatacaaatttcagg |
200 |
Q |
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| T |
40881303 |
gccttgctgtatgttactttcataccatgagtgtgtgtgtttgtgatactgttatcatatatagcagcaactaaaaagattcaataatacaaatttcagg |
40881402 |
T |
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| Q |
201 |
ctgctgaaggagcaaggatatctggtgcatcaagaatcattggagtcgatttagtttccagccgtttcgaattaggtaaaatgctttcttattccaccaa |
300 |
Q |
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| T |
40881403 |
ctgctgaaggagcaaggatatctggtgcatcaagaatcattggagtcgatttagtttccagccgtttcgaattaggtaaaatgctttcttattccaccaa |
40881502 |
T |
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| Q |
301 |
atgctttaagctttgagataaccataaattatgtgacttaatttttgtaatattcttgttctcagctaagaagtttggggtaaatgagtttgtgaaccca |
400 |
Q |
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| T |
40881503 |
atgctttaagctttgagataaccataaataatgtgacttaatttttgtaatattcttgttctcagctaagaagtttggggtaaatgagtttgtgaaccca |
40881602 |
T |
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| Q |
401 |
aaagatcatgacaaacctgtacaac |
425 |
Q |
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| T |
40881603 |
aaagatcatgacaaacctgtacaac |
40881627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 40904436 - 40904551
Alignment:
| Q |
23 |
taggtcttggtgctaccatcaatgttgctaaaccgaaacccggttcttctgttgctatctttggacttggagctgttggccttgctgtatgttactttca |
122 |
Q |
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| T |
40904436 |
taggtcttggtgctactatcaatgttgctaaaccaaaacccggttcttctgtcgctatctttggacttggagctgttggccttgctgtatgttactctca |
40904535 |
T |
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| Q |
123 |
taccatgagtgtgtgt |
138 |
Q |
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| T |
40904536 |
tatcttgtgtgtgtgt |
40904551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 40900076 - 40900184
Alignment:
| Q |
198 |
aggctgctgaaggagcaaggatatctggtgcatcaagaatcattggagtcgatttagtttccagccgtttcgaattaggtaaaatgctttcttattccac |
297 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| | ||||||||||||||| |
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| T |
40900076 |
aggctgctgaaggagccaggatatctggtgcatcaagaatcattggagttgatttagtttccagccgatttgaattaggtacagtgctttcttattccat |
40900175 |
T |
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| Q |
298 |
caaatgctt |
306 |
Q |
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||||||||| |
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| T |
40900176 |
caaatgctt |
40900184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 40904610 - 40904723
Alignment:
| Q |
198 |
aggctgctgaaggagcaaggatatctggtgcatcaagaatcattggagtcgatttagtttccagccgtttcgaattaggtaaaatgc-tttcttattcca |
296 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||| ||||| |||||||||||| |
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| T |
40904610 |
aggctgctgaaggggcaaggatttctggtgcatcaagaatcattggggttgatttagtttccagccgatttgaattaggtacaatgcttttcttattcca |
40904709 |
T |
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| Q |
297 |
ccaaatgctttaag |
310 |
Q |
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||||||||||||| |
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| T |
40904710 |
tcaaatgctttaag |
40904723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 40899871 - 40899982
Alignment:
| Q |
24 |
aggtcttggtgctaccatcaatgttgctaaaccgaaacccggttcttctgttgctatctttggacttggagctgttggccttgctgtatgttactttcat |
123 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||| | || |
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| T |
40899871 |
aggtcttggtgctactatcaatgtagctaaaccaaaacccggttcatctgttgctatctttggccttggagctgttgggcttgcggtatgttactcttat |
40899970 |
T |
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| Q |
124 |
accatgagtgtg |
135 |
Q |
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| T |
40899971 |
accttgagtgtg |
40899982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 425
Target Start/End: Original strand, 40900247 - 40900319
Alignment:
| Q |
353 |
ttcttgttctcagctaagaagtttggggtaaatgagtttgtgaacccaaaagatcatgacaaacctgtacaac |
425 |
Q |
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| T |
40900247 |
ttcttgttgacagctaagaagtttggggtaaatgagtttgtaaacccgaaagatcataacaaacctgttcaac |
40900319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 425
Target Start/End: Original strand, 40904782 - 40904854
Alignment:
| Q |
353 |
ttcttgttctcagctaagaagtttggggtaaatgagtttgtgaacccaaaagatcatgacaaacctgtacaac |
425 |
Q |
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| T |
40904782 |
ttcttgttggcagctaagaagtttggggtgaatgagtttgtaaaccctaaagatcatgacaaacctgttcaac |
40904854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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