View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_high_9 (Length: 425)
Name: NF5541_high_9
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 127 - 415
Target Start/End: Original strand, 30633084 - 30633363
Alignment:
| Q |
127 |
gaattgatggtatgataaatagttgatataataa---gcgtaataagattcaccttactgatccaaaggtaggtatagatacaaccaacttttgattaat |
223 |
Q |
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| T |
30633084 |
gaattgatagtatgataaatagttgatataataataagcgtaataagattcaccttactgataca--------------tacaaccaacttttgattaat |
30633169 |
T |
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| Q |
224 |
catcataacaaacttctaatacgtttaaacataacaaacttctatacttaaatcaatattgaactaattctaattaatatcctagaggccagaactaagg |
323 |
Q |
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| T |
30633170 |
catcataacaaacttctaatacgtttaaacataacaaacttctatacttaaatcaatattaaactaattctaattaatatcccagaggccagaactaagg |
30633269 |
T |
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| Q |
324 |
gaaatgaatctcccaaatgtttttggtcatggcc--ggtgctggtggagtattttcttatatggtatgtgtcacggtatggtaaataacctatg |
415 |
Q |
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| T |
30633270 |
gaaatgaatctcccaaatgtttttggtcatggcccaggtgctggtggagtattttcttatatggtatgtgtcacggtatggtaaataacctatg |
30633363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 30632993 - 30633044
Alignment:
| Q |
29 |
tgctggtctcccttctaactccatacctgcattctaagttgagaagcatgtt |
80 |
Q |
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| T |
30632993 |
tgctggtcccccttctaactccgtacctgcattgtaagttgagaagcatgtt |
30633044 |
T |
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