View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_1 (Length: 637)
Name: NF5541_low_1
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 9334991 - 9335291
Alignment:
| Q |
18 |
aagaaccatagctcttattattctttttgggtctacgaaggtttgctgcctctaaacatctacatatataagaacctatatattaaaccccaaaaagagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9334991 |
aagaaccatagctcttattattctttttgggtctacgaaggtttgctgcctctaaacatctacatatataagaacctatacattaaaccccaaaaagagt |
9335090 |
T |
|
| Q |
118 |
tattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagtggtcaacatcaaatcaaaataacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9335091 |
tattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagtggtcaacatcaaatcaaaataacat |
9335190 |
T |
|
| Q |
218 |
aacataacaaaccaaattcaacca-------------cttttcatatgaatatgtaattaagaattaggagttcattgctaaacatgttgtctggaaaag |
304 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
9335191 |
aacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaattaagaattagaaattcattgctaaacatgttgtctggaaaag |
9335290 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
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| |
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| T |
9335291 |
t |
9335291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 9329260 - 9329480
Alignment:
| Q |
93 |
ctatatattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagt |
192 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329260 |
ctatacattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagt |
9329359 |
T |
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| Q |
193 |
ggtcaacatcaaatcaaaataacataacataacaaaccaaattcaacca-------------cttttcatatgaatatgtaattaagaattaggagttca |
279 |
Q |
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| T |
9329360 |
ggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatgagttca |
9329459 |
T |
|
| Q |
280 |
ttgctaaacatgttgtctgga |
300 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9329460 |
atgctaaacatgttgtctgga |
9329480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 396 - 582
Target Start/End: Original strand, 9335420 - 9335606
Alignment:
| Q |
396 |
tctcaattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgcaaaactagtt |
495 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
9335420 |
tctcaattcaaaagatagaaaggaacatttttagatgacactgataccatttggtcagtttcttaaactaaagtgatttgctctaactgcaaaacaagtt |
9335519 |
T |
|
| Q |
496 |
gaaatatgacagggaatgaattcaacgaacatgccaaataattaggagaaagactaaagatcaacttcaacacatataatgaaacaa |
582 |
Q |
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| T |
9335520 |
gaaatatgacagggaatgaattcaactgacatgccaaataattaggagaaacacttaagatcaacttcaacacatataatgaaacaa |
9335606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 502
Target Start/End: Original strand, 9405755 - 9405864
Alignment:
| Q |
394 |
aatctcaattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaacta |
492 |
Q |
| |
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|||| ||||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||| || | | |||| |||||| |||| ||||| |
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| T |
9405755 |
aatcacaattcaaaagatagcgaggattatttttaggagacactaataccatttggccagtttcttaaattatttttattttctctaattgcataaactt |
9405854 |
T |
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| Q |
493 |
gttgaaatat |
502 |
Q |
| |
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|||||||||| |
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| T |
9405855 |
gttgaaatat |
9405864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 399 - 502
Target Start/End: Original strand, 9424007 - 9424111
Alignment:
| Q |
399 |
caattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaactagttga |
497 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||| || | | |||| |||||| |||| ||||| ||||| |
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| T |
9424007 |
caattcaaaagatagcgaggattatttttaggagacactaataccatttggccagtttcttaaattatttttattttctctaattgcataaacttgttga |
9424106 |
T |
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| Q |
498 |
aatat |
502 |
Q |
| |
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||||| |
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| T |
9424107 |
aatat |
9424111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 9339901 - 9339949
Alignment:
| Q |
182 |
ataatacaagtggtcaacatcaaatcaaaataacataacataacaaacc |
230 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
9339901 |
ataatgcaagaggtcaacatcaaatcaaaataacatagcataacaaacc |
9339949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 533
Target Start/End: Original strand, 9394470 - 9394565
Alignment:
| Q |
439 |
ataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaactagttgaaatatgacagggaatgaattcaacgaacatgccaaa |
533 |
Q |
| |
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||||||||||| |||||||||||| || | |||||| |||||| |||| ||||| ||||||||||| ||||||| ||||||| | ||||||||| |
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| T |
9394470 |
ataccatttggccagtttcttaaattattttgatttcctctaattgcataaacttgttgaaatatgggagggaataaattcaattaccatgccaaa |
9394565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 8060940 - 8060980
Alignment:
| Q |
181 |
cataatacaagtggtcaacatcaaatcaaaataacataaca |
221 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| |
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| T |
8060940 |
cataatacaagtagtcaacatcaaatcaaaataacagaaca |
8060980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 9697026 - 9696977
Alignment:
| Q |
454 |
tttcttaaactaatgtgatttgctctaactgca-aaactagttgaaatat |
502 |
Q |
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|||||||||||| | |||||||||||||||||| || ||||||||||||| |
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| T |
9697026 |
tttcttaaactattttgatttgctctaactgcataagctagttgaaatat |
9696977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 4426670 - 4426746
Alignment:
| Q |
406 |
aaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaact |
483 |
Q |
| |
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|||||||| |||| ||||||||| | |||||| ||||||||||| ||||||| ||||||| | ||||||||| ||||| |
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| T |
4426670 |
aaagatagcaagggacatttttaagggacactgataccatttggccagtttc-taaactattttgatttgctttaact |
4426746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 230969 - 231008
Alignment:
| Q |
182 |
ataatacaagtggtcaacatcaaatcaaaataacataaca |
221 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
230969 |
ataatgcaagtagtcaacatcaaatcaaaataacataaca |
231008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 213842 - 213802
Alignment:
| Q |
190 |
agtggtcaacatcaaatcaaaataacataacataacaaacc |
230 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
213842 |
agtggtcaacatcgaatcaaaataacataacataaaaaacc |
213802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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