View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_low_10 (Length: 420)

Name: NF5541_low_10
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_low_10
NF5541_low_10
[»] chr4 (7 HSPs)
chr4 (20-412)||(21834404-21834804)
chr4 (55-117)||(1548557-1548619)
chr4 (52-109)||(566101-566158)
chr4 (53-106)||(644746-644799)
chr4 (135-176)||(1600295-1600336)
chr4 (53-106)||(12121588-12121641)
chr4 (52-88)||(546846-546882)
[»] chr5 (1 HSPs)
chr5 (266-386)||(28524911-28525035)
[»] chr6 (13 HSPs)
chr6 (55-185)||(19632275-19632405)
chr6 (55-177)||(6594739-6594861)
chr6 (305-389)||(14800856-14800940)
chr6 (50-185)||(6589451-6589586)
chr6 (52-185)||(6394700-6394833)
chr6 (64-173)||(7994324-7994433)
chr6 (52-185)||(14820529-14820662)
chr6 (54-185)||(10579869-10580000)
chr6 (50-88)||(6603330-6603368)
chr6 (100-185)||(6423053-6423138)
chr6 (52-96)||(6432086-6432130)
chr6 (52-104)||(6585367-6585419)
chr6 (144-180)||(6597120-6597156)
[»] chr3 (3 HSPs)
chr3 (268-310)||(46926701-46926743)
chr3 (52-91)||(51113911-51113950)
chr3 (215-244)||(51764737-51764766)
[»] chr7 (2 HSPs)
chr7 (52-185)||(15092281-15092414)
chr7 (215-244)||(10614398-10614427)
[»] chr2 (1 HSPs)
chr2 (52-88)||(45245215-45245251)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 21834404 - 21834804
Alignment:
Q  20 ggaggtgttgaacttgtcaggtgttggacgttatgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggg 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  21834404 ggaggtgttggacttgtcaggtgttggacgttatgtcacagagaagggaatgaaacatatggtagaaagatgtacacaactgagagaaattaatttgggg 21834503  T
Q  120 gatttgcatttaagagacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtatcctgtaagtagtttttgttttaagattttatgtc 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21834504 gatttgcatttaagtgacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtatcctgtaagt-gtttttgttttaagattttatgtc 21834602  T
Q  220 aacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834603 aacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtg 21834702  T
Q  320 tgtacatagtttta-gttttattttt--------accatcgttgtactctcaaataccacctccaccatttttgtactcaaaacgccgcttccacctttg 410  Q
    ||| |||||||||| ||||| |||||         |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21834703 tgttcatagttttatgtttttttttttttttttatccatcgttgtactcccaaatagcacctccaccatttttgtactcaaaacgccgcttccacctttg 21834802  T
Q  411 ct 412  Q
    ||    
T  21834803 ct 21834804  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 1548557 - 1548619
Alignment:
Q  55 tcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgg 117  Q
    ||||||||||||||||||||||||| | |||||| ||  | | ||||||||||||| ||||||    
T  1548557 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 1548619  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 566158 - 566101
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaat 109  Q
    |||| ||||||||||||||||||||  |||| ||||| || |||| ||||||||||||    
T  566158 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaat 566101  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 644799 - 644746
Alignment:
Q  53 tgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagaga 106  Q
    |||||| ||||| |||||||||||| |||| |||||||| |||| |||||||||    
T  644799 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagaga 644746  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 1600336 - 1600295
Alignment:
Q  135 gacgaaaagaggaaattcttctcgcgtcgtggatgccttctt 176  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  1600336 gacgaaaataggaaattcttctcgagtcatggatgccttctt 1600295  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 12121588 - 12121641
Alignment:
Q  53 tgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagaga 106  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||| ||| |||||    
T  12121588 tgtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagaga 12121641  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 546882 - 546846
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaa 88  Q
    |||||||||||||||||||||||||| || |||||||    
T  546882 atgtcacagagaagggagtgaaacatgtgctagaaaa 546846  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 386
Target Start/End: Complemental strand, 28525035 - 28524911
Alignment:
Q  266 tatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgt----acatagttttagttttatttttaccatcgttgtactctc 361  Q
    |||||||||| ||||| ||||||||| ||||| ||  || ||||||||||||||| |    ||||||||||| | ||||||||||||||||||||| |||    
T  28525035 tatataatgtgcaatgcaatgcaagcagttgagtgaagttttgttaaatgtgtgtatgtggacatagttttactattatttttaccatcgttgtaccctc 28524936  T
Q  362 aaataccacctccaccatttttgta 386  Q
    |||  ||||||||||||| ||||||    
T  28524935 aaacgccacctccaccatctttgta 28524911  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 19632405 - 19632275
Alignment:
Q  55 tcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattctt 154  Q
    ||||||||||||||||||||||  |||||||||| || | || |||||  || ||| ||||||||||| | |||| ||| ||| |||  |||||| |||     
T  19632405 tcacagagaagggagtgaaacacgtggtagaaaactgcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactaggaaactctg 19632306  T
Q  155 ctcgcgtcgtggatgccttctttgctagtat 185  Q
    || ||||| ||||||||||||||||||||||    
T  19632305 cttgcgtcatggatgccttctttgctagtat 19632275  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 6594739 - 6594861
Alignment:
Q  55 tcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattctt 154  Q
    |||||||| ||||||  |||||| |||||||||| || |||| | ||||||||||  ||||| ||| ||  |||||||| |||||||  ||| || ||||    
T  6594739 tcacagaggagggagccaaacatgtggtagaaaactgcacacaattgagagaaatgtatttgaggggttgtcatttaagtgacgaaattagggaactctt 6594838  T
Q  155 ctcgcgtcgtggatgccttcttt 177  Q
    ||||||||| |||||||||||||    
T  6594839 ctcgcgtcggggatgccttcttt 6594861  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 14800940 - 14800856
Alignment:
Q  305 gttgttaaatgtgtgtgtacatagttttagttttatttttaccatcgttgtactctcaaataccacctccaccatttttgtactc 389  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||  | |||||| ||||||  ||||||||||||| |||||||||    
T  14800940 gttgttaaatgtgtgtgtacatagcattagtttcattgttaccgccattgtaccctcaaactccacctccaccatctttgtactc 14800856  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 6589451 - 6589586
Alignment:
Q  50 ttatgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaa 149  Q
    ||||||||| ||| |||||||||||||| |||||||||| || ||||||||   ||| ||| || |||||||| | |||||||| ||| |||  ||| ||    
T  6589451 ttatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtgacaaaactagggaa 6589550  T
Q  150 ttcttctcgcgtcgtggatgccttctttgctagtat 185  Q
     ||||||| | || |||||||| ||||| |||||||    
T  6589551 atcttctcccatcatggatgccatctttactagtat 6589586  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 6394833 - 6394700
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaatt 151  Q
    |||||||||| ||||| ||| ||||| |||||||||| || |||| | ||||||| ||| ||||||||||| |  || |||| |||||||| ||| || |    
T  6394833 atgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaact 6394734  T
Q  152 cttctcgcgtcgtggatgccttctttgctagtat 185  Q
      | | |||||||||||||| | |||||||||||    
T  6394733 tctattgcgtcgtggatgccgtatttgctagtat 6394700  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 7994324 - 7994433
Alignment:
Q  64 agggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcg 163  Q
    |||||||||||||| |||||||||| || || | ||||| ||| ||| |||| |||||||| ||| |||| ||| |||| ||| || ||||||||||||     
T  7994324 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtca 7994423  T
Q  164 tggatgcctt 173  Q
     |||||||||    
T  7994424 cggatgcctt 7994433  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 14820662 - 14820529
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaatt 151  Q
    |||||||||||||||| ||||||||| ||||| |||| || ||||  |||||||| ||| |||||| ||  || ||||||||   | |||  |||||| |    
T  14820662 atgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttggcggggtttcatttaagtctcaaaattaggaaact 14820563  T
Q  152 cttctcgcgtcgtggatgccttctttgctagtat 185  Q
    | | |||||||||||||| | |||||||||||||    
T  14820562 catatcgcgtcgtggatgtcatctttgctagtat 14820529  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 10579869 - 10580000
Alignment:
Q  54 gtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacga-aaagaggaaattc 152  Q
    |||||| |||||||||| |||||| |||||||||| || |||| ||| ||||| ||| | ||||  |||||  ||||||| || || ||| |||  ||||    
T  10579869 gtcacaaagaagggagttaaacatgtggtagaaaactgcacacaacttagagagatttacttggatgatttagatttaag-gaggataaataggggattc 10579967  T
Q  153 ttctcgcgtcgtggatgccttctttgctagtat 185  Q
    |||| ||||| ||||||||||||||||||||||    
T  10579968 ttcttgcgtcatggatgccttctttgctagtat 10580000  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 6603330 - 6603368
Alignment:
Q  50 ttatgtcacagagaagggagtgaaacatatggtagaaaa 88  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  6603330 ttatgtcacagagaaaggagtgaaacatgtggtagaaaa 6603368  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 6423138 - 6423053
Alignment:
Q  100 tgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtat 185  Q
    ||||||| ||| ||||||| ||||| ||| |||| ||| |||| | |||| || ||| |  |||||||||||||||||||||||||    
T  6423138 tgagagagatttatttgggagattttcatgtaagtgacaaaaataagaaactcatcttggatcgtggatgccttctttgctagtat 6423053  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 6432130 - 6432086
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacac 96  Q
    |||||||| ||||||||||||||| | ||||||||||||| ||||    
T  6432130 atgtcacacagaagggagtgaaacttgtggtagaaaaatgcacac 6432086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 6585367 - 6585419
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgaga 104  Q
    ||||||||||||||||| |||||||| |||||||||  || |||| |||||||    
T  6585367 atgtcacagagaagggactgaaacatgtggtagaaatttgcacacaactgaga 6585419  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 6597120 - 6597156
Alignment:
Q  144 aggaaattcttctcgcgtcgtggatgccttctttgct 180  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  6597120 aggaaattcttcttgcgtcatggatgccttctttgct 6597156  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 46926743 - 46926701
Alignment:
Q  268 tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926743 tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt 46926701  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 51113911 - 51113950
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatg 91  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  51113911 atgtcacagagaagggagtgaagcatgtggtagaaaaatg 51113950  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 51764737 - 51764766
Alignment:
Q  215 atgtcaacttacaaatgtgcatttactcat 244  Q
    ||||||||||||||||||||||||||||||    
T  51764737 atgtcaacttacaaatgtgcatttactcat 51764766  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 15092281 - 15092414
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaatt 151  Q
    ||||||||||   ||||||||||||| || ||||||| || |||| | ||||||| ||| ||||| || || | ||| |||| ||| |||  |||||| |    
T  15092281 atgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtgacaaaactaggaaact 15092380  T
Q  152 cttctcgcgtcgtggatgccttctttgctagtat 185  Q
     ||||||||||||||||||| | |||||||||||    
T  15092381 attctcgcgtcgtggatgccatatttgctagtat 15092414  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 10614427 - 10614398
Alignment:
Q  215 atgtcaacttacaaatgtgcatttactcat 244  Q
    ||||||||||||||||||||||||||||||    
T  10614427 atgtcaacttacaaatgtgcatttactcat 10614398  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 45245215 - 45245251
Alignment:
Q  52 atgtcacagagaagggagtgaaacatatggtagaaaa 88  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  45245215 atgtcacagataagggagtgaaacatgtggtagaaaa 45245251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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