View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_11 (Length: 406)
Name: NF5541_low_11
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 11346465 - 11346798
Alignment:
| Q |
10 |
cacagaagaacattattggcaggagttgttggaaattgtttgtcctttggattttacaatttcgcataagacattgacgccgacgct------taggatt |
103 |
Q |
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| T |
11346465 |
cacagaagaacattattggcaggagttgttggaaattgtttgtcctttggattttacaatttcgcataagacattgacgccgacgccaacgcctaaggtt |
11346564 |
T |
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| Q |
104 |
attcggagtaataagaaatttatctgagaagaatgatgacgcttgtttagaaaatctcaaaatcaaaacaaagaatataaaaagaaactagatcgactat |
203 |
Q |
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| T |
11346565 |
attcggagtaataagaaatttatctgagaagaatgg---cgcttgttcagaaaatctcaaaatcaaaacaaagaatataaaaagaaactagatcgactat |
11346661 |
T |
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| Q |
204 |
tttagtacttgtaacaataggattattgtcttttttgtgttaataagggaattgattattaaagatgtataacatcaacaatatttggtcacttttcctg |
303 |
Q |
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| T |
11346662 |
tttagtacttgtaacaataggattattgtcttttttgtgttaataagggaattgattattaaagatgtataacatcaacaatatttgatcacttttcctg |
11346761 |
T |
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| Q |
304 |
caaatatatagttcggaaaagtgatatagaggttgaa |
340 |
Q |
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| T |
11346762 |
caaacatatagtccggaaaagtgacatagaggttgaa |
11346798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 40359264 - 40359550
Alignment:
| Q |
10 |
cacagaagaacattattggcaggagttgttggaaattgtttgtcctttggattttacaatttcgcataagacattgacgccgacgcttaggattattcgg |
109 |
Q |
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| T |
40359264 |
cacaggagaacttcattggcaggagttgttggagtttgtttgtccttttgatattacaattctgcataagacgttggcaccgatgtctagggttattcgg |
40359363 |
T |
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| Q |
110 |
agtaataagaaatttatc--------tgagaagaatgatgacgcttgtttagaaaatctcaaaatcaaaacaaagaatataaaaagaaactagatcgact |
201 |
Q |
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| T |
40359364 |
aataataagaaatctattcgtagatttgaaaagaatggtg---cttgtttaaaaaatctcaaaattaaaacaaagaaaacaaaaagaaattggattgact |
40359460 |
T |
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| Q |
202 |
attttagtacttgtaacaataggattattgtcttttttgtgttaataagggaattgattattaaagatgtataacatcaa-caatatttg |
290 |
Q |
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| T |
40359461 |
attgttgtacttgtaacaattggattgttgttgtttttgtattagtaagtgaattaattattaaagatgcatggcatcaatcaatatttg |
40359550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 40363583 - 40363661
Alignment:
| Q |
154 |
aaaatctcaaaatcaaaacaaagaatataaaaagaaactagatcgactattttagtacttgtaacaataggattattgt |
232 |
Q |
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| T |
40363583 |
aaaatctcaaaaataaaacaaagaaaacaaaaagaaactagattgactattgttgtacttgtaacaataggattattgt |
40363661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 40363682 - 40363750
Alignment:
| Q |
222 |
aggattattgtcttttttgtgttaataagggaattgattattaaagatgtataacatcaacaatatttg |
290 |
Q |
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| T |
40363682 |
aggattattgttgtttttgtattaataagagcattggttattaaagatgtatgacatcaacaatatttg |
40363750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 40363434 - 40363505
Alignment:
| Q |
10 |
cacagaagaacattattggcaggagttgttggaaatt-gtttgtcctttggattttacaatttcgcataaga |
80 |
Q |
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| T |
40363434 |
cacagacgaactttattggaaggagttgttggaaattattttgtcctttggatgttacgattttccataaga |
40363505 |
T |
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