View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_15 (Length: 357)
Name: NF5541_low_15
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 27438357 - 27438685
Alignment:
| Q |
18 |
aagacaagtttgattcccactcatcttttgtcttttattccttttcctccttccttcttagatgcatatcattatatcttgcaaaacaaaacaattaaaa |
117 |
Q |
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| T |
27438357 |
aagacaagtttgattcccactcatcttttgtcttttattccttttcctccttccttcttagatgcatatcattatatcttgcaaaacaaa-caattaaaa |
27438455 |
T |
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| Q |
118 |
tcttcacattaaattaaatcacttttattgtctcattggtcagtttcaagacaagttggaatatatttattacaagaaatagatatcaatggattaggct |
217 |
Q |
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| T |
27438456 |
tcttcacattaaattaaatcacttttattgtctcattggtcagtttcaagacaagttggaatatatttattacaagaaatagatatcaatggattaggct |
27438555 |
T |
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| Q |
218 |
tccacgtcgtcaaaagtcgattttcaatctcactcaagcctatctccaacaacaataatttaactacaatacaaaatgaactgtgtacttttttatgtac |
317 |
Q |
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| T |
27438556 |
tccacgtcgtcaaaagtcgattttcaatctcactcaagcctatctccaacaacaataatttaactacaatacaaaatgaactgtgtacttttttatgtac |
27438655 |
T |
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| Q |
318 |
tcatttgtctatttaattgacttgatgatg |
347 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27438656 |
tcatttgtctatttaattgacttgatgatg |
27438685 |
T |
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