View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_2 (Length: 529)
Name: NF5541_low_2
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 2692995 - 2692833
Alignment:
| Q |
24 |
atggatagatagtttaagaaatagaagataaaaacccggaatgacatgccaccgcatggaatatatttattttttcgataaacaaatatcatcggtacat |
123 |
Q |
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| T |
2692995 |
atggatagatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacat |
2692896 |
T |
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| Q |
124 |
caagagcataatcaacaaactgctcaaacctgtaacagaaacacacaccaaatccaaccacac |
186 |
Q |
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| T |
2692895 |
caagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacac |
2692833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 2692625 - 2692522
Alignment:
| Q |
410 |
tatacaccttctaaagctgacgtaactgtttggagatccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtac |
509 |
Q |
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||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692625 |
tatacaccttctaaagctgacataaccgtttggagctccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtac |
2692526 |
T |
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| Q |
510 |
aagt |
513 |
Q |
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|||| |
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| T |
2692525 |
aagt |
2692522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 2684647 - 2684507
Alignment:
| Q |
34 |
agtttaagaaatagaagataaaaacccggaatgacatgccaccgcatggaatatatttattttttcgataaacaaatatcatcggtacatcaagagcata |
133 |
Q |
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| T |
2684647 |
agtttaagaaatagaagatta---cccggaatgacatgccaccacaagcaatatatctattttttcgataaataaataccatcggtacatcaagagcata |
2684551 |
T |
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| Q |
134 |
atcaacaaactgctcaaacctgtaacagaaacacacaccaaatc |
177 |
Q |
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|||| ||| |||||||||||||| |||| |||||| |||||| |
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| T |
2684550 |
gtcaataaattgctcaaacctgtaggagaagcacacaacaaatc |
2684507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 2692757 - 2692694
Alignment:
| Q |
278 |
gggagcattccagtacgacgtttatcaacctgaccattcacatggctgtttgaacaagcaatag |
341 |
Q |
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| T |
2692757 |
gggagcattccagtacggcgtttatcaacctgaccattcacatggctgtttgaacaagcaatag |
2692694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 2679029 - 2678933
Alignment:
| Q |
415 |
accttctaaagctgacgtaactgtttggagatccttgcttgaaaggtgaatttgaaaataaagctgttgctaactggtttatttaattgttgtacaa |
511 |
Q |
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||||||| |||||||| |||| |||||| ||||||||||||||||||||| | |||||| || |||| ||||||||||||| ||||||||||||| |
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| T |
2679029 |
accttcttaagctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgcagttgataactggtttattaaattgttgtacaa |
2678933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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