View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_20 (Length: 292)
Name: NF5541_low_20
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 38626566 - 38626305
Alignment:
| Q |
16 |
atatgtgtgagatggctcaaaacacagaaataccatttgaatgaaagatgaggcattcaaaccacttc-----tatcatatttaattatatggttgatgt |
110 |
Q |
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| T |
38626566 |
atatgtgtgagattgctcaaaacacagaaataccatttgaatgaaagatgaggcattcaaaccacttcacttctatcatata-aattatatggttgatgt |
38626468 |
T |
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| Q |
111 |
atttggtgactatagcttgagtaaattagacgaatccgacatatggtatccagttgtgagtataaataagagacgacagacatttgtttggagttttcgc |
210 |
Q |
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| T |
38626467 |
atttggtgactatagcttgagtgaattagacgaatccgacatatggtatccagttgtgagtataaataagagacgacagacatttgtttggagttttccc |
38626368 |
T |
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| Q |
211 |
agttgaacaagtgaaaagagactaagaatacatgacagaatgatcatcaataaacaaatgcag |
273 |
Q |
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| T |
38626367 |
agttgaacaagtgaaaagagactaagaatacatgacagaatgataatcaataaacaaatgcag |
38626305 |
T |
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