View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_22 (Length: 279)
Name: NF5541_low_22
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 38626322 - 38626060
Alignment:
| Q |
3 |
atcaataaacaaatgcagtaaaggaaatgaaaactactcagtctcagatcctgttatattaatcaataacgatatagcaatt------tgcacactataa |
96 |
Q |
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| T |
38626322 |
atcaataaacaaatgcagtaaaggaaatgaaaactactcagtctcagatcctgttatattaatcaataacgatatagcaattatatcttgcacactataa |
38626223 |
T |
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| Q |
97 |
gcaagagcagtttcctatacatcatgcattctcaaatccataatagcccaaatggttcaatgttatacatagcatttgaaagataaataagaatgcaata |
196 |
Q |
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| T |
38626222 |
gtaagagcagtttcctatacatcatgcattctcaaatccataatagcccaaatggttcaatgttatacatagcatttgaaagataaataagaatgcaata |
38626123 |
T |
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| Q |
197 |
attggtgaaaccatacaacaatacaacaaatatttacaaggtttctgatataagaaggtagta |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38626122 |
attggtgaaaccatacaacaatacaacaaatatttacaaggtttctgatataagaaggtagta |
38626060 |
T |
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