View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_23 (Length: 272)
Name: NF5541_low_23
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 5680704 - 5680933
Alignment:
| Q |
30 |
ttagtggcatatgaacgttagaggcgggctaatttcattttttgtacgtctctaatttccgtcgttaattcaacnnnnnnnnnn-aatagtgattggctg |
128 |
Q |
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| T |
5680704 |
ttagtggcatatgaacgttagaggcgggctaatttcattttttgtacgtctctaatttccgtcgttaattcaactttttttttttaatagtgattggctc |
5680803 |
T |
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| Q |
129 |
gtacactgatacagcaaagaaaattattaacatgaaacaggaatggaaggagtggtctctgtgcataagagccagacaaggatctactcattgcatacca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680804 |
gtacactgatacagcaaagaaaattattaacatgaaacaggaatggaaggagtggtctctgtgcataagagccagacaaggatctactcattgcatacca |
5680903 |
T |
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| Q |
229 |
ctaggtcatggaagtttgtggggttagatg |
258 |
Q |
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| T |
5680904 |
ctaggtcatggaagtttgtggggttagatg |
5680933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 5690058 - 5690171
Alignment:
| Q |
146 |
agaaaatta-ttaacatgaaacaggaatggaaggagtggtctctgtgcataagagccagacaaggatctactcattgcataccactaggtcatggaagtt |
244 |
Q |
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||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
5690058 |
agaaaattaattaatatgaaacagggatggaaggagtggtctctgtgcacaagagccacacaaagatatactcattgcataccacaaggtcatggaagtt |
5690157 |
T |
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| Q |
245 |
tgtggggttagatg |
258 |
Q |
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| T |
5690158 |
tgtggggttagatg |
5690171 |
T |
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