View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_24 (Length: 264)
Name: NF5541_low_24
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7739550 - 7739289
Alignment:
| Q |
1 |
ccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7739550 |
ccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtct |
7739451 |
T |
|
| Q |
101 |
aacaataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgataccta |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
7739450 |
aacaataagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatcccta |
7739351 |
T |
|
| Q |
201 |
ctgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
262 |
Q |
| |
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|||| |||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7739350 |
ctggattgagcaaatttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7739289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 7727230 - 7726971
Alignment:
| Q |
3 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaa |
102 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
7727230 |
aaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaa |
7727131 |
T |
|
| Q |
103 |
caataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctact |
202 |
Q |
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| T |
7727130 |
caaccagttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctact |
7727031 |
T |
|
| Q |
203 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7727030 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7726971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 7731390 - 7731131
Alignment:
| Q |
3 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaa |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
7731390 |
aaagactacaaaaacttgaccttggttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaa |
7731291 |
T |
|
| Q |
103 |
caataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctact |
202 |
Q |
| |
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||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||| |
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| T |
7731290 |
caaccagttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctact |
7731191 |
T |
|
| Q |
203 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
262 |
Q |
| |
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|| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7731190 |
ggattgagcaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcct |
7731131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 7713713 - 7713454
Alignment:
| Q |
3 |
aaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaa |
102 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||| ||||||||| | ||||| || || ||| | |||||| || | || ||| |||||||||| || |
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| T |
7713713 |
aaagactagaaaatctcgaccttggctccaacagccttagtgggccaatccctgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaa |
7713614 |
T |
|
| Q |
103 |
caataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctact |
202 |
Q |
| |
|
||| |||||| |||||| |||||||||||| ||| | ||||| ||||||||| ||||| || || ||||||||||| || ||||||||||| |||||| |
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| T |
7713613 |
caacaagttatccggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctact |
7713514 |
T |
|
| Q |
203 |
gggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
262 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
7713513 |
gggttgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcct |
7713454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7699370 - 7699109
Alignment:
| Q |
1 |
ccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtct |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||| | |||||| | || |||||| | |||||| || || ||||| ||||||||||| |
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|
| T |
7699370 |
ccaaagactacaaaatctagaccttggttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtct |
7699271 |
T |
|
| Q |
101 |
aacaataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgataccta |
200 |
Q |
| |
|
||||| |||||| |||| ||||||||||||| ||||| ||||| |||||||| |||||||| || ||||||||||| || |||||||| || ||| |
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| T |
7699270 |
aacaacaagttatccggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctg |
7699171 |
T |
|
| Q |
201 |
ctgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtgctgctcct |
262 |
Q |
| |
|
|||||||||| |||||| |||| | |||||| |||||||||||||| |||| ||||||| |
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|
| T |
7699170 |
ctgggttgaagaagtttaacaagaatgtgtttgagcataataaatgcctttgtggtgctcct |
7699109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 12908132 - 12908357
Alignment:
| Q |
29 |
tccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccgg |
128 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||| |||||| ||||| | ||| |||||||||||||||| |||||| ||||||||||||| | |
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|
| T |
12908132 |
tccaacaaccttagtggcccgatccccaccttcctaggccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccag |
12908231 |
T |
|
| Q |
129 |
cgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttc |
228 |
Q |
| |
|
|||| ||| | ||||||||||||| |||||||| || || |||| |||||| ||||||||||||||||||||||||||||| ||||| | |||||| |
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|
| T |
12908232 |
cgtcgctcgccaccctaccgtctctctcccagttgaatgttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtat |
12908331 |
T |
|
| Q |
229 |
gtttgatcataataaatgcctctgtg |
254 |
Q |
| |
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|||||| |||||||||||||| |||| |
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|
| T |
12908332 |
gtttgagcataataaatgcctttgtg |
12908357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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