View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_low_25 (Length: 262)

Name: NF5541_low_25
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_low_25
NF5541_low_25
[»] chr3 (19 HSPs)
chr3 (1-262)||(40880927-40881188)
chr3 (172-262)||(37273135-37273225)
chr3 (163-258)||(41724203-41724299)
chr3 (163-262)||(36646361-36646460)
chr3 (163-257)||(2175833-2175926)
chr3 (181-257)||(2152162-2152238)
chr3 (163-262)||(43115048-43115147)
chr3 (164-262)||(39602189-39602287)
chr3 (178-262)||(1217779-1217863)
chr3 (204-262)||(3015822-3015880)
chr3 (163-259)||(22214641-22214737)
chr3 (167-262)||(24281044-24281138)
chr3 (163-262)||(38462273-38462371)
chr3 (178-256)||(30923883-30923961)
chr3 (177-262)||(1809983-1810068)
chr3 (180-261)||(34414764-34414845)
chr3 (166-230)||(2719463-2719527)
chr3 (210-262)||(27290880-27290932)
chr3 (166-202)||(48323816-48323852)
[»] chr2 (21 HSPs)
chr2 (143-262)||(9556209-9556330)
chr2 (163-260)||(10285852-10285949)
chr2 (166-262)||(28933819-28933914)
chr2 (163-251)||(30552633-30552722)
chr2 (168-251)||(32821806-32821889)
chr2 (156-251)||(43141856-43141951)
chr2 (163-257)||(22681169-22681263)
chr2 (177-262)||(43065429-43065514)
chr2 (164-216)||(1899934-1899986)
chr2 (210-262)||(9878661-9878713)
chr2 (174-262)||(15120186-15120274)
chr2 (171-262)||(35810772-35810863)
chr2 (175-258)||(44606093-44606176)
chr2 (164-218)||(9477945-9477999)
chr2 (164-262)||(14316124-14316222)
chr2 (164-258)||(33941902-33941996)
chr2 (178-250)||(1939323-1939395)
chr2 (210-254)||(14451037-14451081)
chr2 (180-260)||(34652017-34652097)
chr2 (178-262)||(35378995-35379079)
chr2 (164-196)||(43199407-43199439)
[»] chr7 (23 HSPs)
chr7 (163-262)||(46082026-46082127)
chr7 (164-258)||(3610723-3610817)
chr7 (173-258)||(34035919-34036005)
chr7 (163-257)||(38010706-38010800)
chr7 (209-262)||(30496743-30496796)
chr7 (164-225)||(39907796-39907857)
chr7 (166-262)||(33645940-33646035)
chr7 (166-262)||(44615083-44615179)
chr7 (180-251)||(3468623-3468694)
chr7 (163-194)||(39711453-39711484)
chr7 (168-258)||(9038109-9038198)
chr7 (204-258)||(15740394-15740448)
chr7 (163-201)||(21453286-21453324)
chr7 (171-241)||(24363601-24363671)
chr7 (156-194)||(44151527-44151565)
chr7 (164-230)||(44821952-44822018)
chr7 (177-215)||(47046134-47046172)
chr7 (156-262)||(48157099-48157205)
chr7 (167-216)||(20881661-20881710)
chr7 (165-258)||(28691818-28691911)
chr7 (196-244)||(17983769-17983817)
chr7 (154-258)||(25670569-25670673)
chr7 (210-262)||(33894666-33894718)
[»] chr6 (26 HSPs)
chr6 (163-262)||(4006706-4006805)
chr6 (204-262)||(10616520-10616578)
chr6 (166-258)||(31624085-31624177)
chr6 (163-258)||(8035131-8035226)
chr6 (163-258)||(30523652-30523746)
chr6 (184-262)||(34939526-34939604)
chr6 (177-262)||(7931705-7931790)
chr6 (163-251)||(2112192-2112280)
chr6 (210-262)||(2460130-2460182)
chr6 (163-262)||(281827-281926)
chr6 (171-258)||(20368163-20368250)
chr6 (204-258)||(1575928-1575982)
chr6 (163-201)||(2727896-2727934)
chr6 (163-261)||(4246402-4246500)
chr6 (220-262)||(8348275-8348317)
chr6 (204-262)||(9027611-9027669)
chr6 (220-262)||(20377899-20377941)
chr6 (220-262)||(30863295-30863337)
chr6 (229-262)||(725634-725667)
chr6 (162-262)||(781371-781472)
chr6 (179-252)||(3528811-3528884)
chr6 (164-201)||(20671905-20671942)
chr6 (163-228)||(31671087-31671152)
chr6 (210-262)||(5566156-5566208)
chr6 (166-262)||(10476101-10476196)
chr6 (210-262)||(32577965-32578017)
[»] chr4 (17 HSPs)
chr4 (163-262)||(2996565-2996664)
chr4 (163-262)||(53315318-53315417)
chr4 (210-262)||(27123331-27123383)
chr4 (210-261)||(1965980-1966031)
chr4 (163-262)||(23819081-23819180)
chr4 (163-262)||(30207550-30207649)
chr4 (163-262)||(45128289-45128388)
chr4 (163-230)||(49219131-49219198)
chr4 (164-230)||(16494816-16494882)
chr4 (181-258)||(1137722-1137799)
chr4 (163-232)||(10192276-10192344)
chr4 (171-248)||(11264301-11264378)
chr4 (164-257)||(28300283-28300376)
chr4 (185-262)||(28614787-28614864)
chr4 (157-262)||(33534148-33534253)
chr4 (169-258)||(46110201-46110290)
chr4 (218-262)||(6428065-6428109)
[»] chr1 (29 HSPs)
chr1 (117-261)||(7218054-7218199)
chr1 (163-262)||(17420195-17420294)
chr1 (158-245)||(27887114-27887201)
chr1 (163-262)||(25005774-25005875)
chr1 (163-261)||(25479573-25479671)
chr1 (171-262)||(11639395-11639486)
chr1 (180-258)||(4699598-4699676)
chr1 (163-257)||(29045896-29045990)
chr1 (168-230)||(35351036-35351098)
chr1 (165-258)||(37842338-37842431)
chr1 (164-216)||(1432508-1432560)
chr1 (163-251)||(3224415-3224503)
chr1 (164-228)||(4700079-4700143)
chr1 (210-262)||(6262777-6262829)
chr1 (156-244)||(30257668-30257756)
chr1 (210-258)||(33108605-33108653)
chr1 (164-244)||(36151502-36151582)
chr1 (163-262)||(38867810-38867909)
chr1 (163-262)||(39270404-39270503)
chr1 (178-240)||(2522636-2522698)
chr1 (163-216)||(26946472-26946525)
chr1 (204-261)||(43722308-43722365)
chr1 (178-254)||(10744308-10744384)
chr1 (178-230)||(15558224-15558276)
chr1 (163-259)||(17269242-17269338)
chr1 (170-230)||(26779936-26779996)
chr1 (156-196)||(34179917-34179957)
chr1 (162-258)||(35668963-35669059)
chr1 (164-216)||(49888760-49888812)
[»] chr8 (11 HSPs)
chr8 (167-257)||(39551193-39551283)
chr8 (180-262)||(14949875-14949957)
chr8 (177-262)||(26473731-26473816)
chr8 (163-262)||(30389091-30389190)
chr8 (204-258)||(8629489-8629543)
chr8 (170-258)||(779044-779132)
chr8 (180-262)||(9540975-9541057)
chr8 (204-258)||(11770994-11771048)
chr8 (173-262)||(35220702-35220791)
chr8 (178-262)||(11569436-11569520)
chr8 (166-258)||(12851171-12851263)
[»] chr5 (20 HSPs)
chr5 (178-262)||(41957430-41957514)
chr5 (164-251)||(10272421-10272508)
chr5 (164-260)||(37794679-37794774)
chr5 (156-262)||(4619692-4619798)
chr5 (204-262)||(13604828-13604886)
chr5 (220-262)||(29363057-29363099)
chr5 (163-251)||(15003504-15003592)
chr5 (163-230)||(7319398-7319465)
chr5 (164-258)||(15246826-15246921)
chr5 (164-258)||(2568651-2568745)
chr5 (164-258)||(7674641-7674735)
chr5 (163-262)||(10391333-10391433)
chr5 (164-230)||(12425564-12425630)
chr5 (220-261)||(5531083-5531124)
chr5 (225-262)||(10152388-10152425)
chr5 (174-262)||(12242689-12242777)
chr5 (170-258)||(17368675-17368763)
chr5 (210-262)||(30269712-30269764)
chr5 (174-262)||(37611194-37611282)
chr5 (174-262)||(37787924-37788012)
[»] scaffold0003 (1 HSPs)
scaffold0003 (177-259)||(306332-306414)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 40881188 - 40880927
Alignment:
Q  1 ctcaacctagttatatattaatatctcaatgcaagcatatattatacactacttggataaacagcttaattaataagagtttacaatataagcccttatc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40881188 ctcaacctagttatatattaatatctcaatgcaaggatatattatacactacttggataaacagcttaattaataagagtttacaatataagcccttatc 40881089  T
Q  101 atttaagtacttactcataagctatttccataatgaaatataaaaataaagtcagtgtttcaatataagctataaattgttttcataaactatcctagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40881088 atttaagtacttactcataagctatttccataatgaaatataaaaataaagtcagtgtttcaatataagctataaattgttttcataaactatcctagag 40880989  T
Q  201 aagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40880988 aagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 40880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 37273135 - 37273225
Alignment:
Q  172 ataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||| ||||||||||| ||||| | ||||| ||||  ||||||||| ||||||||||| || ||||||||||||||||| ||||||||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctct 37273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 41724203 - 41724299
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttata-aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||||||||||| ||||||||| | ||||||| ||||  ||||| |||||||| | ||||||||||| || ||||||||||||||||| ||||||    
T  41724203 atataagctataaactgttttcatcagctatccttgagagcttatataaaataagctgaaaacaacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 36646460 - 36646361
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| ||||| |||||||||||| ||||||||||||  ||||| ||||||| | |||||| |||| || |||| ||||||| |||| ||||||||||    
T  36646460 atataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctct 36646361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 2175926 - 2175833
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    |||||||||||||||||||| ||||||||| ||| ||||  ||||| ||| ||||| |||||| |||||   |||||||||||||||||||||||    
T  2175926 atataagctataaattgttt-cataaactacccttgagagtttatagaaacaagttgaaaacagcttacaaacatgtcataagttgttttcataa 2175833  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 2152238 - 2152162
Alignment:
Q  181 tttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    |||||||||||||||| ||||  ||||| ||| ||||| |||||| ||||||  |||||||||||||||||||||||    
T  2152238 tttcataaactatccttgagagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttcataa 2152162  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 43115048 - 43115147
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||| |||||||||| ||||||| | ||||  ||||  ||||||| | ||||||| ||| || ||||||||||||||||| ||||| ||||    
T  43115048 atataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactct 43115147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 39602287 - 39602189
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||| |||||  ||||||||||| ||||| | ||||| |||| |||||||||| ||||||| ||| |  ||||||||||| ||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctct 39602189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 1217863 - 1217779
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| ||||||| ||||| |||| ||| |||| | ||||||||||| || ||||||||||| ||||| | ||||||||    
T  1217863 tgttttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 1217779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 3015880 - 3015822
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| |||||||| | |||||| |||| || ||||||||||||||||||||||||||||    
T  3015880 ttattaaaataagatgaaaacatcttatggacatgtcataagttgttttcataagctct 3015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 22214737 - 22214641
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagc 259  Q
    |||||| |||||| |||||||||||| ||||||||||||  |||   ||||||| | |||||| |||| || ||||||| | ||| |||||||||||    
T  22214737 atataacctataagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgtcaaatgtttttttcataagc 22214641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 24281044 - 24281138
Alignment:
Q  167 aagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||| |||| |||||  ||||| | ||||  |||| ||| |||||| ||||||||||| ||  || ||||||||||||||||||||||||    
T  24281044 aagctataaactgttgtcatag-ctatcatggagagcttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataagctct 24281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 38462273 - 38462371
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||| |||||||| ||||||||||| |||||| ||| |  ||||  ||||||| | ||||||||||| ||||| ||||||| ||||||  |||||||||    
T  38462273 atatatgctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaacaacttatggtcaagtcataa-ttgtttgtataagctct 38462371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 30923961 - 30923883
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcata 256  Q
    ||||||||||| ||||||||||||  ||||| ||||||| | |||||| ||||  | ||||||||||| ||||| ||||    
T  30923961 tgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 1809983 - 1810068
Alignment:
Q  177 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||||| ||||||||   || ||||| |||||||   ||||||||| | || ||||||||||||||||| | ||||||||    
T  1809983 ttgttttcataagctatcctacgaaacttatagaaataagcagaaaacaactcatggacatgtcataagttgtttccgtaagctct 1810068  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 34414845 - 34414764
Alignment:
Q  180 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    ||||||||||||||| | ||||  |||| |||||||| | ||||||||||| |  |||| ||||  ||||||||||||||||    
T  34414845 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaacttatgcgcatgacatagattgttttcataagctc 34414764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 2719463 - 2719527
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    ||||||||||| ||||||||||| ||||| | ||||| |||| |||||||| | | |||||||||    
T  2719463 taagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaactta 2719527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 27290932 - 27290880
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| | |||||| |||| || ||||||||||| ||||||||||||||||    
T  27290932 aaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctct 27290880  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 48323816 - 48323852
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaa 202  Q
    |||||||||||||||||||||||| |||| |||||||    
T  48323816 taagctataaattgttttcataaattatcatagagaa 48323852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 262
Target Start/End: Original strand, 9556209 - 9556330
Alignment:
Q  143 aaaataaagtca--gtgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtc 240  Q
    ||||||||||||  ||||||  ||| |||||||||| ||||||||||| |||||||||| |  |||| |||||||||| ||| | ||||| || ||||||    
T  9556209 aaaataaagtcaacgtgttttcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaaatctacttatggacatgtc 9556308  T
Q  241 ataagttgttttcataagctct 262  Q
    || |||||||||||||||||||    
T  9556309 attagttgttttcataagctct 9556330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 10285852 - 10285949
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 260  Q
    ||||||||||||| | |||| ||||| ||| | ||||||| ||||  ||||||||| |||||| |||| || ||||||||||||| ||||||||||||    
T  10285852 atataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataagct 10285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 28933819 - 28933914
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| |||||||||||||||||| ||||||||||||  | ||| ||||||||| |||||| | || |  |||| |||||||||||||||||||||||    
T  28933819 taagttataaattgttttcataagctatcctagagagctgatagaaataagttgaaaacagc-tatgaacatgccataagttgttttcataagctct 28933914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 30552722 - 30552633
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaa-caacttacggtcatgtcataagttgttt 251  Q
    |||| ||||||||||| ||||||||||||||||||||||  ||||  ||||||| | |||| |||||||  | |||||||||||||||||    
T  30552722 atatcagctataaattattttcataaactatcctagagagcttatggaaataagctaaaaaccaacttattgacatgtcataagttgttt 30552633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 32821806 - 32821889
Alignment:
Q  168 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    ||||||||| ||||||||||| |||||||| |||  ||||| ||||||  | |||||| |||| || |||||||||||||||||    
T  32821806 agctataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgttt 32821889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 43141856 - 43141951
Alignment:
Q  156 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    |||||| |||||||||||||  ||||||||||| |||||||  |||  ||||  ||||||  | ||||||||||| || |||||||||||||||||    
T  43141856 tgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagttgttt 43141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 22681263 - 22681169
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||||  ||||||| | |||||| |||| |  ||||| ||  |||||||||||||    
T  22681263 atataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgttgttttcataa 22681169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 43065514 - 43065429
Alignment:
Q  177 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||  |||| | ||||  ||||  ||||||| | ||||||| ||| || ||||||||||||||||||||||||||||    
T  43065514 ttgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctct 43065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 1899934 - 1899986
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataag 216  Q
    ||||||||||||| |||||||||||||||| ||| |||  |||||||||||||    
T  1899934 tataagctataaaatgttttcataaactattctaaagagtttataaaaataag 1899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 9878713 - 9878661
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||  ||||||||||| || ||||||||||||||||| ||||||||||    
T  9878713 aaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 15120186 - 15120274
Alignment:
Q  174 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| ||| ||||| | ||||  |||| |||||||| |||||||| || | |  ||||||||||||||||| ||||||||||    
T  15120186 aaattgttttcgtaagctatcatggagagcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctct 15120274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 35810863 - 35810772
Alignment:
Q  171 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| ||||||||||||  ||||||||||||| |||| ||| |||| | |||| |||||| || || | ||||||||||||  |||||||||    
T  35810863 tatatattgttttcatacgctatcctagagaacttatgaaagtaagctaaaaataacttatggccaggccataagttgtttctataagctct 35810772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 44606176 - 44606093
Alignment:
Q  175 aattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||||||  ||| ||| |  | |||| ||||| || | ||||||||||| || ||||||||||||||||||||||||    
T  44606176 aattgttttcataagttattctaaaacacttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataag 44606093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 9477945 - 9477999
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtt 218  Q
    |||||| ||||| |||||||||||| ||||||| |||| ||||| ||||||||||    
T  9477945 tataagttataagttgttttcataagctatcctggagaggttatgaaaataagtt 9477999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 14316222 - 14316124
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||||| ||||||||  | ||| | |||||| |||| ||||||| | |||||| ||||     |||||||||||||||| ||||||||||    
T  14316222 tataagctataaattattttcatatgcaatctttgagaagctatagaaataagctgaaaacagcttatacatatgtcataagttgtttccataagctct 14316124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 33941902 - 33941996
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||| ||||| |||||||||||| ||||| | ||||  |||| | |||||||| ||| || |||| |  | ||||||||||||||||||||||    
T  33941902 tataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataag 33941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgtt 250  Q
    ||||||||||| |||| || ||||  ||||  ||||||||| |||||| |||| || ||||||||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 14451081 - 14451037
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttca 254  Q
    ||||||| | |||||| |||| |||||||||||||||||||||||    
T  14451081 aaataagctgaaaacagcttatggtcatgtcataagttgttttca 14451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 34652097 - 34652017
Alignment:
Q  180 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 260  Q
    ||||||||| ||||| | ||||  ||||  ||||||||| |||||| |||| || |||||||||||||||||  |||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataagct 34652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 35379079 - 35378995
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| ||||| | ||||  |||| |||||||| | ||||||||||| |  || ||||| || ||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctct 35378995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 43199407 - 43199439
Alignment:
Q  164 tataagctataaattgttttcataaactatcct 196  Q
    |||||||||||| ||||||||||||||||||||    
T  43199407 tataagctataagttgttttcataaactatcct 43199439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 46082026 - 46082127
Alignment:
Q  163 atataagctataaattgttttcataaac--tatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 260  Q
    ||||||| ||||| ||||||||||| ||  ||| || ||||  |||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  46082026 atataagttataagttgttttcatagacgctattctggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagct 46082125  T
Q  261 ct 262  Q
    ||    
T  46082126 ct 46082127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 3610817 - 3610723
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||||||||| |||||||| ||||||||||||||||  ||||| ||||||| | ||||   |||| || |||||||| || ||||| ||||||    
T  3610817 tataagctataagttgttttcgtaaactatcctagagagcttatagaaataagctgaaaaaggcttatggacatgtcattagctgtttccataag 3610723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 34035919 - 34036005
Alignment:
Q  173 taaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtc-atgtcataagttgttttcataag 258  Q
    |||||||||||||||| ||||| ||||||| ||   |||||||||| ||||||||||| |  | |||||||||||| ||||||||||    
T  34035919 taaattgttttcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataag 34036005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 38010706 - 38010800
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||||  ||||||| | |||||| |||| |  ||||| ||  |||||||||||||    
T  38010706 atataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatgttatttgttgttttcataa 38010800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 30496743 - 30496796
Alignment:
Q  209 aaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||| | |||||||||||||| |||| |||||| ||||||||||||||||    
T  30496743 aaaataagctgaaaacaacttacgggcatgccataagctgttttcataagctct 30496796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 39907796 - 39907857
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaaca 225  Q
    ||||||||||||| ||||||||||||||||| ||||||| | || |||||||| | ||||||    
T  39907796 tataagctataaactgttttcataaactatcttagagaactaatgaaaataagctgaaaaca 39907857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 33646035 - 33645940
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| ||||||||||| ||||| | ||||  ||||  ||||||  | |||||||||||  | ||||||||||||||||| ||||||||||    
T  33646035 taagctataaactgttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctct 33645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 44615179 - 44615083
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| |||||||||||  || ||| ||||  ||||  ||||||  | |||||| |||  || ||||||||||||||||||||||||||||    
T  44615179 taagctataaactgttttcataagttagccttgagagtttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataagctct 44615083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 3468623 - 3468694
Alignment:
Q  180 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    ||||||||| ||||||||||||| || |  |||||||||  |||||||||| || |||||||| ||||||||    
T  3468623 ttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggacatgtcattagttgttt 3468694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 39711484 - 39711453
Alignment:
Q  163 atataagctataaattgttttcataaactatc 194  Q
    ||||||||||||||||||||||||||||||||    
T  39711484 atataagctataaattgttttcataaactatc 39711453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 9038109 - 9038198
Alignment:
Q  168 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||| ||||||||||||||||| | ||||| || | |||||||| | ||||||| ||| |  ||||||||||| |||||| |||||    
T  9038109 agctataaactgttttcataaactatcatggagaacttgtgaaaataagctgaaaacaa-ttatgaacatgtcataagctgtttttataag 9038198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 15740448 - 15740394
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||| |||||||||| |||||| |||| |  ||||||||||||||||||||||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataag 15740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 21453286 - 21453324
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagaga 201  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  21453286 atataagctataaactgttttcataagctatcctagaga 21453324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 24363671 - 24363601
Alignment:
Q  171 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtca 241  Q
    ||||| |||||||||||| ||||||| |||| |||||  ||||||| | ||||||||||| || |||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 44151565 - 44151527
Alignment:
Q  156 tgtttcaatataagctataaattgttttcataaactatc 194  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  44151565 tgtttccatataagctataagttgttttcataaactatc 44151527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 44821952 - 44822018
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    |||||| |||||  ||||||||||| |||| || ||||| |||| |||||||||| |||||||||||    
T  44821952 tataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaactta 44822018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 47046172 - 47046134
Alignment:
Q  177 ttgttttcataaactatcctagagaagttataaaaataa 215  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  47046172 ttgttttcataagctatcctagagaaattataaaaataa 47046134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 48157205 - 48157099
Alignment:
Q  156 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcat 255  Q
    ||||| |||||||||||||| ||||||||| || |||| |  ||||  ||||  ||||||| | |||||| |||| || |||| ||||||||||||  ||    
T  48157205 tgttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataagttgtttctat 48157106  T
Q  256 aagctct 262  Q
    |||||||    
T  48157105 aagctct 48157099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20881710 - 20881661
Alignment:
Q  167 aagctataaattgttttcataaactatcctagagaagttataaaaataag 216  Q
    ||||||||| |||||||||||||||||| || |||| |||| ||||||||    
T  20881710 aagctataagttgttttcataaactatcttaaagaacttatgaaaataag 20881661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 28691911 - 28691818
Alignment:
Q  165 ataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||| |||| ||||||||||||| ||||||| ||||  |||| |||||||  | | ||||| ||| || || |||||||| ||||||||||||    
T  28691911 ataagttatacattgttttcataagctatcctggagatcttatgaaaataaactgataacaatttatggacaagtcataagctgttttcataag 28691818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 17983769 - 17983817
Alignment:
Q  196 tagagaagttataaaaataagtttaaaacaacttacggtcatgtcataa 244  Q
    ||||||| ||||  |||||||||||||||||||||||| ||| ||||||    
T  17983769 tagagaacttattgaaataagtttaaaacaacttacggacatatcataa 17983817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 25670673 - 25670569
Alignment:
Q  154 agtgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttc 253  Q
    |||||||  ||||||||||| ||||||||| ||||  |||| | ||||  || | |||||||| | ||||||| |||    |||||||||||||||||||    
T  25670673 agtgttttcatataagctatcaattgtttttataacatatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttc 25670574  T
Q  254 ataag 258  Q
    |||||    
T  25670573 ataag 25670569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 33894666 - 33894718
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| | ||||||||||| || ||||||||| | ||||||||||||||||    
T  33894666 aaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctct 33894718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 4006706 - 4006805
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||| |||||||||||| ||||||  |||| ||||| |||||||| | |||| |||||| || ||| || ||||||||||||| |||||||    
T  4006706 atataagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaataacttatggacatatcgtaagttgttttcacaagctct 4006805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 10616578 - 10616520
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||| | || ||||||||||| ||||||||||||||||| ||||||||||    
T  10616578 ttataaaaataagctgaacacaacttacggacatgtcataagttgtttccataagctct 10616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 31624085 - 31624177
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||  ||||||||||  ||||| | ||||| |||| |||||||||| |||||| |||| |  ||||||||||| ||||||||||||    
T  31624085 taagctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataag 31624177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 8035226 - 8035131
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||||||| || ||||||||||||  ||||||||| |  |||  |||||||||| ||||||| ||| |  ||||||||||||||||||| ||||    
T  8035226 atataagctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgttttcttaag 8035131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 30523652 - 30523746
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||||| || ||||||||| ||||||| |||| |||||| |||| |||| |||||| |||| |  |||| |||||||||||| ||||||    
T  30523652 atataagctataagtt-ttttcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacatggcataagttgtttccataag 30523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 34939526 - 34939604
Alignment:
Q  184 cataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||| |||||||  ||| |||||  ||||||| | |||||||||||||| | ||||||||||||||| ||||||||||    
T  34939526 cataagctatcctgaagaggttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctct 34939604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 7931790 - 7931705
Alignment:
Q  177 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| || |||||||| |||  |||   ||||||| | ||||||||||| |  ||||||||||||||||||||||||||||    
T  7931790 ttgttttcaaaagctatcctacagagcttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctct 7931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 2112192 - 2112280
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    |||||| |||||| |||||||||||||||||| |||||   ||||| ||||||    ||||||||||| |  |||||||||||||||||    
T  2112192 atataaactataagttgttttcataaactatcttagagtgcttatagaaataaaccgaaaacaacttatgaacatgtcataagttgttt 2112280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 2460182 - 2460130
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| |||||||||||  | ||||||||||||||||| ||||||||||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctct 2460130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 281926 - 281827
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||||||  ||| ||||||| ||||||||||||  | ||  ||||||| | |||||||||||  | |||||||||||||| || ||| ||||||    
T  281926 atataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctct 281827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 20368250 - 20368163
Alignment:
Q  171 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||| |||||||||||| || || | ||||| |||| |||||||||| |||  | |||| |  ||||||||||||||||||||||||    
T  20368250 tataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataag 20368163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 1575928 - 1575982
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||| |||||||||| |||||| |||| |  ||||||||||||||||||||||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataag 1575982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 2727934 - 2727896
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagaga 201  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  2727934 atataagctataagttgttttcataagctatcctagaga 2727896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 4246402 - 4246500
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    |||||| ||||||  ||||||||||| ||||  | ||||   |||||||||||||| |||||| |||| || |||||||| |||||||| || ||||||    
T  4246402 atataatctataagctgttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgtcatgagttgtttccaaaagctc 4246500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 8348275 - 8348317
Alignment:
Q  220 aaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||    
T  8348275 aaaacaacttatggtcatgttataagttgttttcgtaagctct 8348317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 9027611 - 9027669
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| |||||||| | ||||||||||| || ||||||||||||| ||| ||||||||||    
T  9027611 ttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 20377941 - 20377899
Alignment:
Q  220 aaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  20377941 aaaacaacttatagacatgtcataagttgttttcataagctct 20377899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 30863295 - 30863337
Alignment:
Q  220 aaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| |  ||||||||||||||||||||||||||||    
T  30863295 aaaacaacttatgtacatgtcataagttgttttcataagctct 30863337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 725667 - 725634
Alignment:
Q  229 tacggtcatgtcataagttgttttcataagctct 262  Q
    ||||| ||||||||||||||||||||||||||||    
T  725667 tacggacatgtcataagttgttttcataagctct 725634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 781371 - 781472
Alignment:
Q  162 aatataagctataaattgttttcataaactatccta-gagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 260  Q
    ||||||||||||||  | |||||||||| |||| || ||||  ||||| ||||| | | ||||||  | |||| |||||||||| |||||||||||||||    
T  781371 aatataagctataagcttttttcataaattatcttaagagagcttatagaaatatgctgaaaacagttgacggacatgtcataatttgttttcataagct 781470  T
Q  261 ct 262  Q
    ||    
T  781471 ct 781472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 3528811 - 3528884
Alignment:
Q  179 gttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgtttt 252  Q
    |||||||| ||||||| | ||||  |||| |||||||| | ||||||| ||| || ||||||||||||||||||    
T  3528811 gttttcatgaactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgtttt 3528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 20671942 - 20671905
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagaga 201  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  20671942 tataagctttaaattgttttcataaactatcatagaga 20671905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 31671152 - 31671087
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaact 228  Q
    |||||||||||||  ||||||| |||||||||||||| |  |||| |||||||| | |||||||||    
T  31671152 atataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaacaact 31671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 5566208 - 5566156
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| ||||||||||| || ||||| ||||| ||||||||| ||||||    
T  5566208 aaataagttgaaaacaacttatggacatgtaataagctgttttcattagctct 5566156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 10476196 - 10476101
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||| ||| |||||||||||| ||||| | ||| || |||| ||||||| | ||||||| |||||  |||||||| || ||||| ||||||||||    
T  10476196 taagctgtaagttgttttcataagctatcttggag-agctatagaaataagctgaaaacaatttacgagcatgtcattagatgtttccataagctct 10476101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 32578017 - 32577965
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| | |||||| || | || ||||||||||||||||||||||||||||    
T  32578017 aaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctct 32577965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 2996565 - 2996664
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| ||||| |||||||||||| ||||| | ||||   ||| |||||||||| |||| | |||| || ||||||||||||||||||||||||||||    
T  2996565 atataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctct 2996664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 53315318 - 53315417
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||||||  |||| ||| |||| | ||||||||  |||| |||||||||| |||| | |||| || ||||| ||| ||||||||||||||||||    
T  53315318 atataagctataagctgttctcaaaaacaaacctagagagcttatgaaaataagttaaaaatagcttatggacatgtgatatgttgttttcataagctct 53315417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 27123383 - 27123331
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| |||||||||||  | ||||||||||||||||| ||||||||||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctct 27123331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 1965980 - 1966031
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    ||||||||| |||||| |||| |  |||||||||||||||||||||||||||    
T  1965980 aaataagttaaaaacagcttatgaacatgtcataagttgttttcataagctc 1966031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 23819081 - 23819180
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| |||||  ||||||||||| ||||| |  |||  ||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||| ||||    
T  23819081 atataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactct 23819180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 30207649 - 30207550
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||| |||||||||||| ||| | ||||||  ||||  ||||||| | |||||| ||||| | ||||||||| | |||| | |||||||||    
T  30207649 atataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagcttacagacatgtcatatgctgttcttataagctct 30207550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 45128388 - 45128289
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||||||||||||||||||| ||||| | |  ||||  ||||||| | |||||| || | || ||||  || |||||||| ||||||||||    
T  45128388 atataagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaaaacagctcatggacatgatatcagttgtttccataagctct 45128289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 49219131 - 49219198
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    ||||||||||||| |||||||||||||||||| || |||  ||||  ||||||| | |||||||||||    
T  49219131 atataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaactta 49219198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 16494882 - 16494816
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    |||||||||||| |||||||||||| ||||| | ||||  || ||||| |||||| |||||||||||    
T  16494882 tataagctataagttgttttcataagctatcttggagagcttgtaaaactaagttgaaaacaactta 16494816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 1137722 - 1137799
Alignment:
Q  181 tttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||||||| |||||  ||||  ||||||  | ||||||||||| |  ||||||||||| ||||||||||||    
T  1137722 tttcataaactatccaagagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataag 1137799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 10192276 - 10192344
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacg 232  Q
    ||||||| ||||| ||||||||| || ||||||| |||| | ||| |||||||||| |||||||||||||    
T  10192276 atataagttataagttgttttcaaaagctatcctggaga-gctatgaaaataagttgaaaacaacttacg 10192344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 11264301 - 11264378
Alignment:
Q  171 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttg 248  Q
    ||||| |||||||||||| | ||||||||||  ||||  ||||||||| ||||||  ||| || ||||||||||||||    
T  11264301 tataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttg 11264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 28300376 - 28300283
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    ||||||||||||| | ||||||||  ||||| |  |||  |||| |||||||||| ||||||||||| |  ||||||||| | |||||||||||    
T  28300376 tataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataa 28300283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 28614864 - 28614787
Alignment:
Q  185 ataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| ||||||||||||| |||| |||||||| | |||| | |||| ||  ||||||||| |||||| ||||||||||    
T  28614864 ataagctatcctagagaacttatgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagctct 28614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 33534253 - 33534148
Alignment:
Q  157 gtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcata 256  Q
    ||||| |||||| ||| || |||||||| |||| |||  | ||||  |||| |||||||| | ||||||||||| ||  |||||| || |||||||||||    
T  33534253 gtttctatataatctacaagttgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcata 33534154  T
Q  257 agctct 262  Q
    ||||||    
T  33534153 agctct 33534148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 46110201 - 46110290
Alignment:
Q  169 gctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||||| ||||||||||| ||||  | ||||  ||||| ||||||| | ||||||||||| |   || ||||||||||||||||||||    
T  46110201 gctataaactgttttcataagctatgattgagagcttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataag 46110290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 6428065 - 6428109
Alignment:
Q  218 ttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||| ||||||| || ||||||||||||||||||||||| ||||    
T  6428065 ttaaatcaacttatggacatgtcataagttgttttcataatctct 6428109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 7218199 - 7218054
Alignment:
Q  117 ataagctatttccataatgaaatataaaaataaagtcag--tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaata 214  Q
    |||| ||||||||||||| |||  ||||| ||||||||   |||||  ||||||||||||| |||||||||||| ||||||| ||||| |||| ||||||    
T  7218199 ataatctatttccataataaaaggtaaaa-taaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaata 7218101  T
Q  215 agtttaaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    |||| |||||| |||  |  | |||||||||| ||||||| ||||||    
T  7218100 agttgaaaacagcttgtgaacgtgtcataagtcgttttcacaagctc 7218054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 17420195 - 17420294
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||||||| ||||||| ||| |||||  ||| || | ||  ||||||||| ||||||| ||| || ||||| ||||||||||||||||||||||    
T  17420195 atataagctataaactgttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctct 17420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 27887201 - 27887114
Alignment:
Q  158 tttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataag 245  Q
    |||| ||||||||||||| |||||||||||||||||| | ||||   |||||||||||| | ||||||| ||| || |||||||||||    
T  27887201 tttccatataagctataagttgttttcataaactatcatggagagcatataaaaataagctaaaaacaatttatggacatgtcataag 27887114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 25005875 - 25005774
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggt--catgtcataagttgttttcataagct 260  Q
    ||||||||||||| |||||||||||| ||||||| ||||  ||||||||| ||| |||||| | |||||  |   | |||||||||||||||||||||||    
T  25005875 atataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaatatcttactatagaaagtcataagttgttttcataagct 25005776  T
Q  261 ct 262  Q
    ||    
T  25005775 ct 25005774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 25479573 - 25479671
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    ||||| ||||||| |||||||||||| ||||||||||||  |||| |||||||| | ||||||||| | |  ||||||||||  | |||||||||||||    
T  25479573 atataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagctc 25479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 11639486 - 11639395
Alignment:
Q  171 tataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||| ||||| |||||  ||| |||||||  |||| |||||||| | |||||| |||| || ||||||||||| ||||||||||||||||    
T  11639486 tataaactgtttgcataagttattctagagagcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctct 11639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 4699676 - 4699598
Alignment:
Q  180 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||||||||  ||||  ||||| ||||||| | |||||| |||| |  ||||||||||||||||||||||||    
T  4699676 ttttcataaactatcccggagagcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataag 4699598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 29045990 - 29045896
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    ||||||||||||| |||||||||||| || |||| ||||  | ||  || || ||| ||| ||||||| || |||||||||||||||||||||||    
T  29045990 atataagctataagttgttttcataagctgtcctggagagatgatggaagtacgttaaaagcaacttatggacatgtcataagttgttttcataa 29045896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 35351036 - 35351098
Alignment:
Q  168 agctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    |||||||| |||| ||||||||||||||||||||  ||| ||||||||| | |||||||||||    
T  35351036 agctataagttgtcttcataaactatcctagagagcttacaaaaataagctgaaaacaactta 35351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 37842431 - 37842338
Alignment:
Q  165 ataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||| |||||||||||| ||||| |  |||| ||||||||||||| | |||||  |||| |  |||||||| || ||||||||||||    
T  37842431 ataagctataagttgttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataag 37842338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 1432508 - 1432560
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataag 216  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| ||| ||||    
T  1432508 tataagctataaattgttttcataaactatcttggagaacttatgaaagtaag 1432560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 3224415 - 3224503
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    ||||||||||||   |||||| |||| |||| |||||||| |||| |||||||| | | ||||||||| || |||||||||||| ||||    
T  3224415 atataagctatagggtgtttttataagctattctagagaacttatgaaaataagctgagaacaacttatggacatgtcataagtagttt 3224503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 4700143 - 4700079
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaact 228  Q
    ||||||||||||| |||||| |||||||||||| ||||  |||| |||||||| | |||||||||    
T  4700143 tataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 6262777 - 6262829
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| ||||||||||||| || ||| ||||||||| ||||||||||||||    
T  6262777 aaataagcttaaaacaacttatggacatatcataagttattttcataagctct 6262829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 30257668 - 30257756
Alignment:
Q  156 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataa 244  Q
    |||||| ||||||||| ||| |||||||||||||||||||| |||   ||||| ||||||| | |||||| |||| |  ||||||||||    
T  30257668 tgtttccatataagctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcataa 30257756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 33108653 - 33108605
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||| ||||||||||| ||||||| ||| |||||||||||||||    
T  33108653 aaataagttgaaaacaacttatggtcatggcatgagttgttttcataag 33108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 36151582 - 36151502
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataa 244  Q
    |||||| |||||||||||||| ||||| ||||||| ||  |||| |||||||||| ||||||  ||| || ||||||||||    
T  36151582 tataagttataaattgttttcgtaaacaatcctagtgagcttatgaaaataagttgaaaacaggttatggacatgtcataa 36151502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 38867909 - 38867810
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| |||| |||||||||||  |||| |  |||| |||| |||||||| | ||||||||| | || ||| ||||||||| ||| ||||||||||    
T  38867909 atataagctttaaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatggacatatcataagttatttccataagctct 38867810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 39270503 - 39270404
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| |||||  ||||||||||| ||| | ||||||   ||| |||||||||| |||||| |||| || |||| || ||| ||||||||||||||||    
T  39270503 atataagatataagctgttttcataagctaccatagagagcatatgaaaataagttgaaaacagcttatggacatgccaaaagctgttttcataagctct 39270404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 2522636 - 2522698
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtc 240  Q
    |||||||||||||||| || ||||| ||||  ||||||||| ||||||| |||||| ||||||    
T  2522636 tgttttcataaactattctggagaatttatggaaataagttgaaaacaaattacggacatgtc 2522698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 26946525 - 26946472
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataag 216  Q
    ||||||||||||| | |||||||||| ||||| ||||||||| || ||||||||    
T  26946525 atataagctataagtcgttttcataagctatcttagagaagtcatgaaaataag 26946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 43722365 - 43722308
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    ||||||||||||| | |||||||| || |  ||||||||||||| |||||||||||||    
T  43722365 ttataaaaataagctgaaaacaacataagaacatgtcataagtttttttcataagctc 43722308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 10744308 - 10744384
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttca 254  Q
    ||||||||||| || || ||||||| ||||||||||||| | |||||| |||| |  |||| |||||| ||||||||    
T  10744308 tgttttcataagctgtcttagagaacttataaaaataagatgaaaacagcttatgaacatgccataagctgttttca 10744384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 15558224 - 15558276
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    |||||||||||  |||||||||||| ||||| ||||||| | |||||||||||    
T  15558224 tgttttcataagatatcctagagaacttatagaaataagctgaaaacaactta 15558276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 17269242 - 17269338
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagc 259  Q
    |||||||| |||| |||||||||||| ||||||| ||||  |||    |||||||| ||||||||| | |  ||||||||||| | |||||||||||    
T  17269242 atataagcaataagttgttttcataagctatcctggagagcttacggtaataagttaaaaacaactcatgaacatgtcataaggtattttcataagc 17269338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 26779996 - 26779936
Alignment:
Q  170 ctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    |||||| |||||||||||| ||||| |  |||| |||| |||||||||| |||||||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaactta 26779936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 34179957 - 34179917
Alignment:
Q  156 tgtttcaatataagctataaattgttttcataaactatcct 196  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  34179957 tgttttaatctaagctataaactgttttcataaactatcct 34179917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 35668963 - 35669059
Alignment:
Q  162 aatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||| ||||||| |||||||||||  ||||||  | || ||||  ||||||||| ||||||| ||| || ||| ||||||| || |||||||||    
T  35668963 aatataaactataaactgttttcataacttatcctgtaaaatttatggaaataagttgaaaacaatttatggacatatcataagctgctttcataag 35669059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 49888760 - 49888812
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataag 216  Q
    |||||||||| | |||||||||||| ||||| ||||||| |||| ||||||||    
T  49888760 tataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 39551283 - 39551193
Alignment:
Q  167 aagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataa 257  Q
    ||||||||| |||||||||||| || |||| ||||  ||||||||||||||| |||||| |||  || ||||||||||||||||| |||||    
T  39551283 aagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataa 39551193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 14949875 - 14949957
Alignment:
Q  180 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| |||||||| |||  ||||| ||||||| | |||||| |||| || ||||||||||||| ||||||||||||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctct 14949957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 26473816 - 26473731
Alignment:
Q  177 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||||||||| ||||||||||||  |||| |||||||||| |||  | ||||  | ||||||||||| ||||||||||||||||    
T  26473816 ttgttttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctct 26473731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 30389091 - 30389190
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||   ||||||||||| || |||||||||| |||| |||||||| | ||||||||||| |  |||||||| || | |||||||| |||||    
T  30389091 atataagctatacgctgttttcataagctttcctagagaacttatgaaaataagctgaaaacaacttatgaacatgtcattagctattttcatatgctct 30389190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 8629489 - 8629543
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||| | ||||| ||||||||||| | |||||||||||||||||||||||||    
T  8629489 ttataaatagaagttgaaaacaacttatgatcatgtcataagttgttttcataag 8629543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 779132 - 779044
Alignment:
Q  170 ctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||| ||||||||||||||||| | ||||   ||  |||||||| | ||||||||||| |  ||||||||||||||||||| ||||    
T  779132 ctataaactgttttcataaactatcttggagagtgtaccaaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaag 779044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 9541057 - 9540975
Alignment:
Q  180 ttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||| ||||||||||||  || | |||||||| | || |||| ||| || ||||||||||| ||||| ||||||||||    
T  9541057 ttttcataagctatcctagagagcttttgaaaataagctgaacacaaattatggacatgtcataagatgtttccataagctct 9540975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 11771048 - 11770994
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||||||||||| |||||||| ||  | ||| ||||||||||||||||||||    
T  11771048 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 11770994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 35220791 - 35220702
Alignment:
Q  173 taaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| ||||||||||| |||| || ||||  ||||||||||||| | |||| | |||| || ||||||||||  ||||||||||| ||||    
T  35220791 taaactgttttcataagctattctggagagcttataaaaataagctaaaaatagcttatgggcatgtcataaactgttttcataaactct 35220702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 11569520 - 11569436
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| ||||| | ||||  || | |||||||| | ||||||||||| |  ||||||||||| ||||| ||||||||||    
T  11569520 tgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctct 11569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 12851171 - 12851263
Alignment:
Q  166 taagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||| ||||||||||||||| || |||| ||||  |||| ||||||||   |||||| |||| |  ||||| ||||| ||||||||||||    
T  12851171 taagctagaaattgttttcataagctttccttgagagcttatgaaaataagccgaaaacatcttatgaacatgttataagctgttttcataag 12851263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 41957514 - 41957430
Alignment:
Q  178 tgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| ||||||| ||||| |||| |||||||| | ||||||||||| || ||||||||||| ||||| | ||||||||    
T  41957514 tgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 41957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 10272508 - 10272421
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    |||||||||||| |||||||||||| | ||| | ||||  |||| |||||||| | |||||||||||| | |||||||||||||||||    
T  10272508 tataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgttt 10272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 37794774 - 37794679
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 260  Q
    ||||||||||| ||| ||||||| | |||||||| ||| |||||  ||||||| | |||||| |||| |  ||||||||||||||||||||||||||    
T  37794774 tataagctatagattattttcatgagctatcctataga-gttatcgaaataagctcaaaacagcttatgaacatgtcataagttgttttcataagct 37794679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 4619692 - 4619798
Alignment:
Q  156 tgtttcaatataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcat 255  Q
    |||||| |||||| ||||||| ||| ||||||| ||||| | ||||| ||||  ||||||| | ||| || |||| |  |||||||| ||||||||||||    
T  4619692 tgtttctatataatctataaactgtcttcataagctatcatggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcat 4619791  T
Q  256 aagctct 262  Q
    |||||||    
T  4619792 aagctct 4619798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 13604886 - 13604828
Alignment:
Q  204 ttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||| |||||||||| |||||||| || || ||||||||||| ||||||||||||||||    
T  13604886 ttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctct 13604828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 29363057 - 29363099
Alignment:
Q  220 aaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  29363057 aaaacaacttatgggcatgtcataagttgttttcataagctct 29363099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 15003592 - 15003504
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttt 251  Q
    ||||||||||||| | |||||||||| |||||| |||||  ||||  |||||| |  |||||||||||||  |||||| ||||||||||    
T  15003592 atataagctataagtggttttcataagctatccaagagagcttatggaaataaatcgaaaacaacttacgaacatgtcgtaagttgttt 15003504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 7319398 - 7319465
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    |||||||||||||| ||||||| ||| ||||| | ||||| ||||||||||||| | ||| |||||||    
T  7319398 atataagctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaaagcaactta 7319465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 15246826 - 15246921
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacg-gtcatgtcataagttgttttcataag 258  Q
    |||||||||| |  ||||||||||| ||||| ||||||| | |||||||||||||  ||| |||||| |  | ||||||||||||| |||||||||    
T  15246826 tataagctatgagctgttttcataagctatcttagagaaatgataaaaataagttgcaaaaaacttatgaatgatgtcataagttgctttcataag 15246921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 2568651 - 2568745
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||||||||| |||||||||||| ||||| | ||||  | || |||||||| | |||| |||||| |   |||||||||| ||||||||||||    
T  2568651 tataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataag 2568745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 7674641 - 7674735
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    ||||||| ||||| ||||||||||| ||||| | ||||| || | |||||||| | |||||| ||||    ||||||||||||||||| ||||||    
T  7674641 tataagccataaaatgttttcataagctatcttggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttccataag 7674735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 10391333 - 10391433
Alignment:
Q  163 atataagctataaattgttttcataaactatcctagagaagttataa--aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagct 260  Q
    ||||||||||||| ||||||| |||| ||||||||||| |||| |||  ||||||||| ||||||||| |  | ||||||||||  |||||| |||| ||    
T  10391333 atataagctataatttgtttttataagctatcctagag-agttttaaggaaataagttgaaaacaactaatagacatgtcataaagtgtttttataaact 10391431  T
Q  261 ct 262  Q
    ||    
T  10391432 ct 10391433  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 12425564 - 12425630
Alignment:
Q  164 tataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaactta 230  Q
    ||||||||||||  |||||||| || ||||| | ||||| |||| |||||||||| |||||||||||    
T  12425564 tataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaacaactta 12425630  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 5531083 - 5531124
Alignment:
Q  220 aaaacaacttacggtcatgtcataagttgttttcataagctc 261  Q
    ||||||||||| || ||| |||||||||||||||||||||||    
T  5531083 aaaacaacttatggacatatcataagttgttttcataagctc 5531124  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 10152388 - 10152425
Alignment:
Q  225 aacttacggtcatgtcataagttgttttcataagctct 262  Q
    |||||| || ||||||||||||||||||||||||||||    
T  10152388 aacttatggacatgtcataagttgttttcataagctct 10152425  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 12242777 - 12242689
Alignment:
Q  174 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||||| ||||| | ||||  ||||  || |||| | ||||||||| | | |||||||||||||| ||| ||||||||||    
T  12242777 aaattgttttcataagctatcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataagttttttccataagctct 12242689  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 17368675 - 17368763
Alignment:
Q  170 ctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 258  Q
    |||||| |||||||||||| ||||| | |||| |||||  ||||||| | |||||  | || |  ||||||||||||||||||||||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataag 17368763  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 30269764 - 30269712
Alignment:
Q  210 aaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||| | ||||||||||| || ||||| |||||||||||| |||||||||    
T  30269764 aaataagctaaaaacaacttatgggcatgttataagttgttttaataagctct 30269712  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 37611282 - 37611194
Alignment:
Q  174 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||||| ||||| | ||||  ||||  ||||||  | |||||| |||| |  ||||||| ||||||||||||||||||||    
T  37611282 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctct 37611194  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 37788012 - 37787924
Alignment:
Q  174 aaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagctct 262  Q
    ||||||||||||||| ||||| | ||||  ||||  ||||||  | |||||| |||| |  ||||||| ||||||||||||||||||||    
T  37788012 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctct 37787924  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 306332 - 306414
Alignment:
Q  177 ttgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataagc 259  Q
    |||||||||||| ||||||||||||  ||||  || |||| | |||||| |||| || ||||||||||| ||||| |||||||    
T  306332 ttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataagctgtttccataagc 306414  T

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