View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_29 (Length: 237)
Name: NF5541_low_29
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 32207271 - 32207070
Alignment:
| Q |
13 |
aagaatatgcaaaaatcaaagtagcaaaagttgcaataaaaacatagtagaaattcatgacatatatagttagttataagtgatgaaaactgaccagata |
112 |
Q |
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| T |
32207271 |
aagaaaatgcaaaaatcgaagtagcaaaagttgcaataacaacatagtagaaattcatgacata----gttagttataagtgatgaaaactgaccagata |
32207176 |
T |
|
| Q |
113 |
ataaggcaaagtaatgagtctttgaatgacaagccattgaaaaccataaccaagaaaccctaaaaaagcagacatgatcaaaaccacccacaatggaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32207175 |
ataaggcaaagtaatgagtctttgaatgacaagccattgaaaaccataaccaagaagccctaaaaaagcagacatgatcaaaaccacccacaatggaaaa |
32207076 |
T |
|
| Q |
213 |
tacatg |
218 |
Q |
| |
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|||||| |
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| T |
32207075 |
tacatg |
32207070 |
T |
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