View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_3 (Length: 517)
Name: NF5541_low_3
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Original strand, 45598147 - 45598565
Alignment:
| Q |
15 |
aataggaacaaactcacaccaaataaccaaacctaaaaagtgnnnnnnnnnnnnnnnnaatggcacaaaaataaaaacagaatatagatgaattattatg |
114 |
Q |
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| T |
45598147 |
aataggaacaaactcacaccaaataaccaaacctaaaaagtgtttttgtttttgttttaatggcacaaaaataaaaacagaatatagatgaattattatg |
45598246 |
T |
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| Q |
115 |
agaaaaagaagaaagatactaaccatgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaacaaagaagaaacaag |
214 |
Q |
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| T |
45598247 |
agaaaaagaagaaagatactaaccatgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaacaaagaagaaacaag |
45598346 |
T |
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| Q |
215 |
taatggttattgaaagaatgattgcaccgaggaatctccttattagaatggccaatgaaacttttctgcgtttctgcattgatccttttggtaaaacact |
314 |
Q |
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| T |
45598347 |
taatggttattgaaagaatgattgcaccgaggaatctccttattagaatggccaatgaaacttttctgcgtttctgcattgatccttttggtaaaacact |
45598446 |
T |
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| Q |
315 |
gaattcacctaagttgattatgctctttctccctactgaacaatcataaataaattacattataagt---nnnnnnntgacataacagaaaaagaacaaa |
411 |
Q |
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| T |
45598447 |
gaattcacctaagttgattatgctctttctccctactaaacaatcataaataaattacattataagtaaaaaaaaaatgacataacagaaaaagaacaaa |
45598546 |
T |
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| Q |
412 |
accaggtactaggttcggg |
430 |
Q |
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| T |
45598547 |
accaggtactaggttcggg |
45598565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 501
Target Start/End: Original strand, 45598597 - 45598631
Alignment:
| Q |
467 |
cagaaaaagaacatgaacctcggactctcggagtg |
501 |
Q |
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| T |
45598597 |
cagaaaaagaacatgaacctcggactctcggagtg |
45598631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 19398246 - 19398307
Alignment:
| Q |
138 |
catgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
199 |
Q |
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| T |
19398246 |
catgtgaatcttttcattgaagtgattaggatcagttggagaagttgatacgtgcacatgaa |
19398307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 42794449 - 42794510
Alignment:
| Q |
138 |
catgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
199 |
Q |
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| T |
42794449 |
catgtgaatcttttcattgaagtgattaggatcagttggagaagttgatatgtgcacatgaa |
42794510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 13510284 - 13510343
Alignment:
| Q |
140 |
tgtgaatcttttcattgaagttattaggatcagttggagaagttgatacgtgcacatgaa |
199 |
Q |
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| T |
13510284 |
tgtgaatcttttcattgaagtgattaggatcggttggagaagttgatacgtgcacatgaa |
13510343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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