View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_30 (Length: 237)
Name: NF5541_low_30
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 54201570 - 54201349
Alignment:
| Q |
1 |
cagcctgcaaccggctgcaccataaagccgtttgtcgaggatctaacttcctcaaaaataaacatgtcgcctaatttataagctagctacttacccaagt |
100 |
Q |
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| T |
54201570 |
cagcctgcaaccggctgcaccataaagccgtttgtcgaggatctaacttcctcaaaaataaacatgtcgcctaatttataagctagctacttacccaagt |
54201471 |
T |
|
| Q |
101 |
ccacaagaaataggctatttggaaagcattctgcaaaagaataatgnnnnnnntatattatgagtaagttctgattgatcaagattgaactaaaatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54201470 |
ccacaagaaataggctatttggaaagcattctgcaaaagaataatgaaaaaaatatattatgagtaagttctgattgatcaagattgaactaaaatcaaa |
54201371 |
T |
|
| Q |
201 |
gcatcttacacaatgttatgtg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
54201370 |
gcatcttacacaatgttatgtg |
54201349 |
T |
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