View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_low_35 (Length: 222)

Name: NF5541_low_35
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_low_35
NF5541_low_35
[»] scaffold0038 (2 HSPs)
scaffold0038 (9-171)||(44494-44656)
scaffold0038 (91-163)||(35971-36043)
[»] chr6 (10 HSPs)
chr6 (9-171)||(28244332-28244494)
chr6 (18-172)||(28296222-28296376)
chr6 (18-172)||(28515697-28515851)
chr6 (23-163)||(28186951-28187091)
chr6 (91-163)||(28235809-28235881)
chr6 (26-153)||(28096953-28097080)
chr6 (109-163)||(28327115-28327169)
chr6 (109-163)||(28504751-28504805)
chr6 (27-132)||(2186369-2186474)
chr6 (27-71)||(28141090-28141134)
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-163)||(56785-56939)
[»] chr2 (1 HSPs)
chr2 (91-132)||(3281272-3281313)


Alignment Details
Target: scaffold0038 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 44494 - 44656
Alignment:
Q  9 gtacgaggagaattatgttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagc 108  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44494 gtacgaggggaattatgttgtgacgttacatttcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagc 44593  T
Q  109 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaatactgatatc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44594 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaatactgatatc 44656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 35971 - 36043
Alignment:
Q  91 gagcctggaagacatagcaggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaata 163  Q
    ||||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||| |||| |||||||||    
T  35971 gagccaggaagacgtagtaggttgtggttctgtaaagatataattgatgtcttagaagcaaataaggtgaata 36043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 28244332 - 28244494
Alignment:
Q  9 gtacgaggagaattatgttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagc 108  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244332 gtacgaggggaattatgttgtgacgttacatttcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagc 28244431  T
Q  109 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaatactgatatc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244432 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaatactgatatc 28244494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 28296376 - 28296222
Alignment:
Q  18 gaattatgttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagcaggttgtgg 117  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||| ||| |||||||||    
T  28296376 gaattatgttgtgacattacatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtgg 28296277  T
Q  118 ttccataaagatataattgatgtcttagaagaaaatcaggtgaatactgatatct 172  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  28296276 ttccataaagacataattcatgtcttagaagaaaataaggtgaatactgatatct 28296222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 28515697 - 28515851
Alignment:
Q  18 gaattatgttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagcaggttgtgg 117  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||| ||| |||||||||    
T  28515697 gaattatgttgtgacattacatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtgg 28515796  T
Q  118 ttccataaagatataattgatgtcttagaagaaaatcaggtgaatactgatatct 172  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  28515797 ttccataaagacataattcatgtcttagaagaaaataaggtgaatactgatatct 28515851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 28186951 - 28187091
Alignment:
Q  23 atgttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagcaggttgtggttcca 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    || | |||||||| ||||||||||||| ||| ||||||||||||||    
T  28186951 atgttgtgacgttacatgccttgatagagaaaatgggtaaagaaattgtccggaaagagtctccaaaagagcctggaagacgtagtaggttgtggttcca 28187050  T
Q  123 taaagatataattgatgtcttagaagaaaatcaggtgaata 163  Q
    |||||| ||||||||||||||||||| |||| |||||||||    
T  28187051 taaagacataattgatgtcttagaagcaaataaggtgaata 28187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 28235809 - 28235881
Alignment:
Q  91 gagcctggaagacatagcaggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaata 163  Q
    ||||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||| |||| |||||||||    
T  28235809 gagccaggaagacgtagtaggttgtggttctgtaaagatataattgatgtcttagaagcaaataaggtgaata 28235881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 28097080 - 28096953
Alignment:
Q  26 ttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagcaggttgtggttccataa 125  Q
    ||||||| ||||||| |||||||||  | ||||||||||||||||| |   || |||| ||||| || ||||||| || ||||||||||| ||||||| |    
T  28097080 ttgtgacattacatgacttgatagaagacatgggtaaagaaattgtaagacaagaatcaccaaaagaacctggaaaacgtagcaggttgtcgttccatga 28096981  T
Q  126 agatataattgatgtcttagaagaaaat 153  Q
    ||||||| || | || ||||||||||||    
T  28096980 agatatatttcaagttttagaagaaaat 28096953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 28327115 - 28327169
Alignment:
Q  109 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaata 163  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||    
T  28327115 aggttgtggtttcataaagatataattcatgtcttagaagaaagtaaggtgaata 28327169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 28504751 - 28504805
Alignment:
Q  109 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaata 163  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||    
T  28504751 aggttgtggtttcataaagatataattcatgtcttagaagaaagtaaggtgaata 28504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 2186369 - 2186474
Alignment:
Q  27 tgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagcaggttgtggttccataaa 126  Q
    |||||| ||||||| |||||||||| |||||||||||||||| ||     || |||| ||||| |||||||||| || ||| |||||||||| |||| ||    
T  2186369 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 2186468  T
Q  127 gatata 132  Q
    ||||||    
T  2186469 gatata 2186474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 28141090 - 28141134
Alignment:
Q  27 tgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgt 71  Q
    |||||| ||||||| |||||||||| | |||||||||||||||||    
T  28141090 tgtgacattacatgacttgatagaggagatgggtaaagaaattgt 28141134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 56939 - 56785
Alignment:
Q  9 gtacgaggagaattatgttgtgacgttacatgtcttgatagagaaaatgggtaaagaaattgtcaatgaaaaatctccaaatgagcctggaagacatagc 108  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    || | |||||||| ||||||||||||| |||     
T  56939 gtaccaggggaattatgttgtgacgttacatgccttgatagagaaaatgggtaaagaaattgtccgcaaagagtctccaaaagagcctggaagacgtagt 56840  T
Q  109 aggttgtggttccataaagatataattgatgtcttagaagaaaatcaggtgaata 163  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  56839 aggttatggttccataaagatataatttatgtcttagaagaaaataaggtgaata 56785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 3281272 - 3281313
Alignment:
Q  91 gagcctggaagacatagcaggttgtggttccataaagatata 132  Q
    |||||||||| || ||||||||||||||||||| ||||||||    
T  3281272 gagcctggaaaacgtagcaggttgtggttccatgaagatata 3281313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University