View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5541_low_6 (Length: 480)

Name: NF5541_low_6
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5541_low_6
NF5541_low_6
[»] chr1 (7 HSPs)
chr1 (15-463)||(49547046-49547495)
chr1 (28-194)||(47872526-47872682)
chr1 (64-186)||(33857205-33857328)
chr1 (64-186)||(33923595-33923718)
chr1 (140-201)||(44261669-44261730)
chr1 (362-406)||(32123584-32123628)
chr1 (377-418)||(34141638-34141679)
[»] chr3 (6 HSPs)
chr3 (363-406)||(21777206-21777249)
chr3 (362-400)||(42668172-42668210)
chr3 (366-411)||(35586173-35586218)
chr3 (131-246)||(14961756-14961874)
chr3 (362-413)||(42157733-42157784)
chr3 (157-244)||(574404-574492)
[»] chr5 (4 HSPs)
chr5 (363-413)||(1175862-1175912)
chr5 (363-413)||(12150688-12150738)
chr5 (360-429)||(13839473-13839540)
chr5 (366-412)||(33740020-33740066)
[»] chr8 (2 HSPs)
chr8 (367-418)||(32874844-32874894)
chr8 (363-406)||(39418173-39418216)
[»] chr7 (3 HSPs)
chr7 (362-405)||(13858445-13858488)
chr7 (364-413)||(7181389-7181438)
chr7 (363-431)||(45471832-45471900)
[»] chr4 (4 HSPs)
chr4 (158-201)||(55771061-55771104)
chr4 (158-201)||(55835295-55835338)
chr4 (364-418)||(56439290-56439344)
chr4 (362-413)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (364-418)||(5193176-5193229)
chr2 (368-418)||(38216438-38216488)
[»] chr6 (1 HSPs)
chr6 (366-418)||(6695406-6695458)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Complemental strand, 49547495 - 49547046
Alignment:
Q  15 ctactgtttgtggtaatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactga 114  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547495 ctactgtatgcggtaatttagagactaatttgatcaaactttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactga 49547396  T
Q  115 tgagtgatgatagaattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcattatatctacttcgg 214  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547395 tgagtgatgatagaattttttcacgtaatgaactaatgtagtttatatctttggagtattaaaataggggttagaggttcatgcattatatctacttcgg 49547296  T
Q  215 aaactaatttccactggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaactaagactctgagagtttcgaggg 314  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547295 gaactaatttccacgggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaactaagactctgagagtttcgaggg 49547196  T
Q  315 gaggaagagtaggggggaaattggagaaatcttgcaca-nnnnnnnatagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 413  Q
    |||| ||||||| |||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547195 gagggagagtagaggggaaattggagaaatcttccacattttttttatagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 49547096  T
Q  414 attttggaagtattattacacaacatagatttcacgaaaccctctttagt 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547095 attttggaagtattattacacaacatagatttcacgaaaccctctttagt 49547046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 47872526 - 47872682
Alignment:
Q  28 taatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatag 127  Q
    ||||||||||||||||||||| ||  ||||  |||||   ||||||||||||||| | ||||||||| ||||| ||||||| |  |||||       |||    
T  47872526 taatttagagactaatttgatgaaattttgcacaatt---tgatggattaagttgtgacactctgcattgttgaagaactacatcgatga-------tag 47872615  T
Q  128 aattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttc 194  Q
    || ||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  47872616 aaatttgtcatgtaatgaactgatggagtctatatctttggagtattaaaataggggttaggggttc 47872682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 33857205 - 33857328
Alignment:
Q  64 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 159  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33857205 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33857301  T
Q  160 tatctttggagtattaaaataggggtt 186  Q
    |||||||||||||||||||||||||||    
T  33857302 tatctttggagtattaaaataggggtt 33857328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 33923718 - 33923595
Alignment:
Q  64 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 159  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33923718 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33923622  T
Q  160 tatctttggagtattaaaataggggtt 186  Q
    |||||||||||||||||||||||||||    
T  33923621 tatctttggagtattaaaataggggtt 33923595  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 44261730 - 44261669
Alignment:
Q  140 taatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcatt 201  Q
    ||||| ||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  44261730 taatggactgatggagtctttatctttggaggattaaaataggggttaggggttcatgcatt 44261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 32123628 - 32123584
Alignment:
Q  362 agtgtttttgtagataatgataaatgaatgtttatcattaatata 406  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  32123628 agtgtttttgtaaagaatgataaatgaatgtttatcattaatata 32123584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 34141679 - 34141638
Alignment:
Q  377 aatgataaatgaatgtttatcattaatatacttttaaatttt 418  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  34141679 aatgataaattaatgtttatgattaatatatttttaaatttt 34141638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 21777206 - 21777249
Alignment:
Q  363 gtgtttttgtagataatgataaatgaatgtttatcattaatata 406  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  21777206 gtgtttttgtagagaatgataaatgaatgtttatcattaatata 21777249  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 42668210 - 42668172
Alignment:
Q  362 agtgtttttgtagataatgataaatgaatgtttatcatt 400  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668210 agtgtttttgtagataatgataaatgaatgtttatcatt 42668172  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 35586173 - 35586218
Alignment:
Q  366 tttttgtagataatgataaatgaatgtttatcattaatatactttt 411  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  35586173 tttttgtagagaatgataaatgaaagtttatcattaatatattttt 35586218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 14961756 - 14961874
Alignment:
Q  131 tttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatg---cattatatctacttcggaaactaatttcca 227  Q
    ||||||| ||||| |||| ||| | |||| || ||||||| ||||||||| |||| || ||||||||   |||| ||| | ||| |||||||||| ||||    
T  14961756 tttttcatgtaataaactgatggaatctacatatttggagcattaaaatatgggtcaggggttcatgatgcattttatgtccttgggaaactaatgtcca 14961855  T
Q  228 ctggtaaaaactgtcttac 246  Q
    ||| ||| |||||||||||    
T  14961856 ctgataacaactgtcttac 14961874  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 42157733 - 42157784
Alignment:
Q  362 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 413  Q
    |||| ||||| ||| |||||||||||||||||||||||| ||||| ||||||    
T  42157733 agtgcttttgcagagaatgataaatgaatgtttatcattcatatatttttaa 42157784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 574492 - 574404
Alignment:
Q  157 ctatatctttggagtattaaaa-taggggttagaggttcatgcattatatctacttcggaaactaatttccactggtaaaaactgtctt 244  Q
    |||||||||||||| ||||||| |||||||| |  || |||||||| ||| | | | |||||||||| | |||| ||||||||||||||    
T  574492 ctatatctttggagaattaaaagtaggggtttggagtgcatgcattttatgtccataggaaactaatgttcacttgtaaaaactgtctt 574404  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 1175862 - 1175912
Alignment:
Q  363 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 413  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  1175862 gtgtttttgtagagaatgataaatgaatgtttatgattaatatatttttaa 1175912  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 12150738 - 12150688
Alignment:
Q  363 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 413  Q
    ||||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  12150738 gtgtttttgtagataatgataaatgaatacttatgattaatatatttttaa 12150688  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 13839473 - 13839540
Alignment:
Q  360 atagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaattttggaagtattat 429  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||  |||||| |||||  ||||||||    
T  13839473 atagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattat 13839540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 33740020 - 33740066
Alignment:
Q  366 tttttgtagataatgataaatgaatgtttatcattaatatactttta 412  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| |||||    
T  33740020 tttttttagataatgataaatcaatgtttataattaatataatttta 33740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 32874894 - 32874844
Alignment:
Q  367 ttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 418  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  32874894 ttttgtagataatgaaaaatgaatgtttatgattaatata-ttttaaatttt 32874844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 39418216 - 39418173
Alignment:
Q  363 gtgtttttgtagataatgataaatgaatgtttatcattaatata 406  Q
    ||||||||||||  |||||||||||||||||||| |||||||||    
T  39418216 gtgtttttgtagggaatgataaatgaatgtttatgattaatata 39418173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 13858488 - 13858445
Alignment:
Q  362 agtgtttttgtagataatgataaatgaatgtttatcattaatat 405  Q
    |||||||||||||||||||||||||||||| |||| ||||||||    
T  13858488 agtgtttttgtagataatgataaatgaatgcttatgattaatat 13858445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 7181389 - 7181438
Alignment:
Q  364 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 413  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||| ||||||    
T  7181389 tgtttttgtagagaatgataaaagaatgcttatgattaatatatttttaa 7181438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 45471832 - 45471900
Alignment:
Q  363 gtgtttttgtagataatgataaatgaa-tgtttatcattaatatacttttaaattttggaagtattatta 431  Q
    ||||||||||||||||| |||||||||  | |||||||||||||| |||| |||||||  ||||||||||    
T  45471832 gtgtttttgtagataataataaatgaacagcttatcattaatata-tttttaattttgagagtattatta 45471900  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 55771061 - 55771104
Alignment:
Q  158 tatatctttggagtattaaaataggggttagaggttcatgcatt 201  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55771061 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55771104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 55835295 - 55835338
Alignment:
Q  158 tatatctttggagtattaaaataggggttagaggttcatgcatt 201  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55835295 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 56439290 - 56439344
Alignment:
Q  364 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 418  Q
    |||| ||||||| ||||||| ||||||||| |||||||||||| |||||| ||||    
T  56439290 tgttattgtagagaatgatagatgaatgttaatcattaatatatttttaattttt 56439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 34713117 - 34713068
Alignment:
Q  362 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 413  Q
    ||||||||||||||   |||||||||||||||||| ||||||||| ||||||    
T  34713117 agtgtttttgtagag--tgataaatgaatgtttatgattaatatatttttaa 34713068  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 5193229 - 5193176
Alignment:
Q  364 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 418  Q
    |||||||||| | ||| |||||||||||||||| ||||||||| |||||||||||    
T  5193229 tgtttttgtacagaataataaatgaatgtttatgattaatata-ttttaaatttt 5193176  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 38216438 - 38216488
Alignment:
Q  368 tttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 418  Q
    |||||||| ||||||| |||||||||||| ||||||||| |||||| ||||    
T  38216438 tttgtagagaatgatagatgaatgtttatgattaatatatttttaattttt 38216488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 6695458 - 6695406
Alignment:
Q  366 tttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 418  Q
    ||||| |||| ||||||||||||||| |||| ||||||||| |||| ||||||    
T  6695458 tttttttagagaatgataaatgaatgcttataattaatataatttttaatttt 6695406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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