View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5541_low_8 (Length: 440)
Name: NF5541_low_8
Description: NF5541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5541_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 39609159 - 39608938
Alignment:
| Q |
17 |
atgaacagttaaattgactataaagtgatctatgtttgaataaaatcgagactataaatcatgtttggatttaaaaattccaaatcacaatttcaagtta |
116 |
Q |
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| T |
39609159 |
atgaacagttaaattgactataaagtgatctatgtttgaataaaatcgagactataaatcatgtttgaatttaaaaattccaaatcacaatttcaagtta |
39609060 |
T |
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| Q |
117 |
aagttagtgcatgtttggtttgatggaatgatggtgagccaccatgattttggctaaagttacactttaaagtttcagtttgaagtttcaacaaacccac |
216 |
Q |
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| T |
39609059 |
aagttagtgcatgtttggtttgatggaatgatggtgagccaccatgattttggctaaagttacactttaaagtttcagtttaaagtttcaacaaacccac |
39608960 |
T |
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| Q |
217 |
ggtgtcaaactcctcatgattc |
238 |
Q |
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| T |
39608959 |
ggtgtcaaactcctcatgattc |
39608938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 304 - 422
Target Start/End: Complemental strand, 39608872 - 39608754
Alignment:
| Q |
304 |
caattttatgttcctagaatcactttagtttctcgtaaataaaagtgaatatccaaacatgaaaatcaaagaaaaccagcagaggccaagtaatctgctt |
403 |
Q |
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| T |
39608872 |
caattttatgttcctagaatcactttagtttctcgtaaataaaagtgaatatgcaaacatgaaaatcaaagaaaaccagcagaggccaagtaatctgctt |
39608773 |
T |
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| Q |
404 |
gatcaatagatagtcgatc |
422 |
Q |
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| T |
39608772 |
gatcaatagatagtcgatc |
39608754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 39609553 - 39609469
Alignment:
| Q |
55 |
aataaaatcgagactataaatcatgtttggatttaaaaattccaaatcacaatttcaagttaaagttagtgcatgtttggtttga |
139 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||| |
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| T |
39609553 |
aataaaattgagactataaatcatgtttggatttaaaaattccaaatcaaaatttcaagttagagttagtacatgtttggattga |
39609469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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