View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5542-Insertion-1 (Length: 555)

Name: NF5542-Insertion-1
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5542-Insertion-1
NF5542-Insertion-1
[»] chr4 (12 HSPs)
chr4 (8-555)||(38220114-38220658)
chr4 (8-555)||(38242969-38243506)
chr4 (8-160)||(38238416-38238568)
chr4 (8-178)||(38226869-38227039)
chr4 (8-178)||(38253599-38253769)
chr4 (9-178)||(38248484-38248653)
chr4 (8-177)||(38214447-38214616)
chr4 (459-555)||(38237994-38238090)
chr4 (442-548)||(38214083-38214187)
chr4 (454-548)||(38226462-38226556)
chr4 (459-548)||(38248176-38248264)
chr4 (459-548)||(38253329-38253418)
[»] chr6 (4 HSPs)
chr6 (39-160)||(17455117-17455238)
chr6 (39-175)||(17434002-17434138)
chr6 (459-548)||(17454558-17454647)
chr6 (459-548)||(17433479-17433568)
[»] chr1 (1 HSPs)
chr1 (81-133)||(21547011-21547063)
[»] chr2 (2 HSPs)
chr2 (69-135)||(11479291-11479357)
chr2 (29-109)||(11485520-11485600)


Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 38220658 - 38220114
Alignment:
8 aaagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttg 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
38220658 aaagagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgttactgatactttg 38220559  T
108 aaactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaacaaattcatcaagaaacacgcagtcgatgcacaataaaagttagatc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
38220558 aaactatcagataattcaaaaggaatgaactcagaacatgattgcaaggtaaacaaattcatcaagaaacacgcagtcgatgcacaataaatgttagatc 38220459  T
208 aagatcagtcggttcacaaaatatacaaattttgannnnnnnnnnnnnnnnattaacatccaaaatacctagcttgaaatctaggaccgtccgatcttga 307  Q
    |||||||||| ||||||||||||||||||||||||                ||||| ||||||||||||||| |||||||||||||||||||||||||||    
38220458 aagatcagtcagttcacaaaatatacaaattttgatttttttttttttt--attaaaatccaaaatacctagattgaaatctaggaccgtccgatcttga 38220361  T
308 accaacagtctatgtcgattgcgtgaatgtagagtctcgagattgcaaggaatccaagtttgtagtttgtttgtctcaatctcgatttaactctgaaatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
38220360 accaacagtctatgtcgattgcgtgaatgtagagtctcgagattgcaaggaatccaaatttgtagtttgtttgtctcaatctcgatttaactctgaaatg 38220261  T
408 taacactaatccagtgttgggtattatatagtaaagcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataagg 507  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||    
38220260 taacactaatccaatgttgggtattatatagtaaagcaatatgga-tttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataagg 38220162  T
508 atggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaa 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
38220161 atggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaa 38220114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 38243506 - 38242969
Alignment:
8 aaagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttg 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||| || |||| | ||    
38243506 aaagagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctcttaagatatatgtaattgatgttaccgatagtatg 38243407  T
108 aaactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaacaaattcatcaagaaacacgcagtcgatgca-caataaaagttagat 206  Q
    |||| ||||||||| |||||||||| |||||  || |||||||| ||||||||  ||||||||||||||||| ||||| ||||| |||| || ||| |||    
38243406 aaacaatcagataactcaaaaggaacgaactttgatcatgattgcaaggtaaatgaattcatcaagaaacacacagtcaatgcatcaatgaatgttggat 38243307  T
207 caagatcagtcggttcacaaaatatacaaattttgannnnnnnnnnnnnnnnattaacatccaaaatacctagcttgaaatctaggaccgtccgatc-tt 305  Q
    ||||| ||||| ||||||||||||||| ||| ||||                ||||| |||||||||||| |||||||||||||||||| || |||| ||    
38243306 caagaccagtcagttcacaaaatatacgaatattga--------ttattttgattaaaatccaaaataccgagcttgaaatctaggaccttctgatcttt 38243215  T
306 gaaccaacagtctatgtcgattgcgtgaatgtagagtctcgagattgcaaggaatccaagtttgtagtttgtttgtctcaatctcgatttaactctgaaa 405  Q
    |  |||||||||| ||  ||||||||||||||||||||||  |  ||| |||||||||| || ||| ||| ||||||||||||||||||||||||| |||    
38243214 ggtccaacagtctgtgctgattgcgtgaatgtagagtctctcggctgctaggaatccaaattagtaatttatttgtctcaatctcgatttaactcttaaa 38243115  T
406 tgtaacactaatccagtgttgggtattatatagtaaagcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataa 505  Q
    ||||||||||  ||| |||||||||| |||  |   ||||| ||||| |||  ||||||||| ||||||||||||||||||| |||| |||| ||||||     
38243114 tgtaacactagcccattgttgggtatcatagtg---agcaacatgga-tttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatag 38243019  T
506 ggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaa 555  Q
    ||| | |||||| ||||||||||||||||||| |||||||||||||||||    
38243018 ggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaa 38242969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 38238568 - 38238416
Alignment:
8 aaagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttg 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
38238568 aaagagaagcctctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttg 38238469  T
108 aaactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaa 160  Q
    ||||||||||||||||||||||||||||||||||| ||||| || ||||||||    
38238468 aaactatcagataattcaaaaggaatgaactcagatcatgactgcaaggtaaa 38238416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 38227039 - 38226869
Alignment:
8 aaagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttg 107  Q
    |||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
38227039 aaagagaagtctctacctaagatacactgtaaaatgggttgattgggatgattttatagtgcctgttaagatatatatacttgatgttactgatactttg 38226940  T
108 aaactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaacaaattcatcaagaaaca 178  Q
    |||| ||||||| ||||||||||| |||||||| | |||||||| ||||||||  ||||||| ||||||||    
38226939 aaaccatcagatgattcaaaaggattgaactcaaaccatgattgcaaggtaaatgaattcattaagaaaca 38226869  T

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Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 38253769 - 38253599
Alignment:
8 aaagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttg 107  Q
    |||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
38253769 aaagagaaacctctacttaagatacacagtgaaatgggttgattgggatgattttatagtgcctgttaagatatatataattgatgttactgatactttg 38253670  T
108 aaactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaacaaattcatcaagaaaca 178  Q
    |||| ||||||| ||||||||| | |||||||||| |||||||| |||||||  |||||||| ||||||||    
38253669 aaaccatcagatgattcaaaagaattgaactcagaccatgattgcaaggtaagtaaattcattaagaaaca 38253599  T

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Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 38248653 - 38248484
Alignment:
9 aagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttga 108  Q
    ||||||||| | |||||||||| ||| || || ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| || |||||    
38248653 aagagaagcctttacttaagatgcacagtaaagtgggttgattgggatgattttatagtgcccgttaagatatatataattgatgtcactggtagtttga 38248554  T
109 aactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaacaaattcatcaagaaaca 178  Q
    ||||||||||| |||||||||||||||| ||||| |||||||| ||||||||   |||||||||||||||    
38248553 aactatcagatgattcaaaaggaatgaaatcagatcatgattgcaaggtaaatgcattcatcaagaaaca 38248484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 38214616 - 38214447
Alignment:
8 aaagagaagcttctacttaagatacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttg 107  Q
    |||||||||  ||||  ||||||||||||| |||||||| ||||||||||||||||| |||||||  |||||||||||| ||||||| ||||||| ||||    
38214616 aaagagaagtctctatctaagatacactgtaaaatgggtcgattgggatgattttattgtgcctgtgaagatatatataattgatgttactgatagtttg 38214517  T
108 aaactatcagataattcaaaaggaatgaactcagaacatgattgaaaggtaaacaaattcatcaagaaac 177  Q
    |||| ||||||| ||||||||||| ||||||| || |||||||| ||||||||  |||||||||||||||    
38214516 aaaccatcagatgattcaaaaggattgaactcggatcatgattgcaaggtaaatgaattcatcaagaaac 38214447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 555
Target Start/End: Complemental strand, 38238090 - 38237994
Alignment:
459 ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaa 555  Q
    |||||||||  |||||||||||||||||| |||| |||| |||||||||| ||||||   ||||||||||||||||||| |||||||||||||||||    
38238090 ttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaa 38237994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 38214187 - 38214083
Alignment:
442 agcaatatggattttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataag 541  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||| || |||||| | |||||     ||||||||||||||||||||| ||||| |||    
38214187 agcaacatggatttt--ttgtttcaggttgagtatcaagttgaatcttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgaggacaag 38214090  T
542 tctccca 548  Q
    |||||||    
38214089 tctccca 38214083  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 38226556 - 38226462
Alignment:
454 tttaattgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctccca 548  Q
    |||| |||||||||  |||||||||||||||||| |||  |||| ||||||| ||  |||||||||||||| |||||||||||| ||||||||||    
38226556 tttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctccca 38226462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 548
Target Start/End: Complemental strand, 38248264 - 38248176
Alignment:
459 ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctccca 548  Q
    |||||||||||||||||||| |||||||| |||| |||| | ||  |||| |||||||| |||||||||||||| |||| ||||||||||    
38248264 ttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca 38248176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 548
Target Start/End: Complemental strand, 38253418 - 38253329
Alignment:
459 ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctccca 548  Q
    |||||||||||||||||| ||||| |||| |||| || | | || ||||| |||||||| ||||||||||| || |||| ||||||||||    
38253418 ttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaagtctccca 38253329  T

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Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 17455238 - 17455117
Alignment:
39 aaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttgaaactatcagataattcaaaaggaatgaact 138  Q
    |||||||||||||||||||| |||||||| |||  ||||| ||| ||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
17455238 aaatgggttgattgggatgaatttatagttcctcttaagacatacataattgatgttactgatagtttgaaactatcagatgattcaaaaggaatgaact 17455139  T
139 cagaacatgattgaaaggtaaa 160  Q
    |||| |||||||| ||||||||    
17455138 cagatcatgattgtaaggtaaa 17455117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 17434138 - 17434002
Alignment:
39 aaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttgaaactatcagataattcaaaaggaatgaact 138  Q
    |||||| ||||||||||||||||||||||||||| ||||  ||| ||| ||||||| ||||||| ||| ||||||||| || |||||||||||| |||||    
17434138 aaatggattgattgggatgattttatagtgcctgttaaggcatacataattgatgttactgatagtttaaaactatcaaatgattcaaaaggaacgaact 17434039  T
139 cagaacatgattgaaaggtaaacaaattcatcaagaa 175  Q
    |||| |||||||| ||||||||  | |||||||||||    
17434038 cagatcatgattgtaaggtaaatgatttcatcaagaa 17434002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 459 - 548
Target Start/End: Complemental strand, 17454647 - 17454558
Alignment:
459 ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctccca 548  Q
    ||||||||| ||||||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||    
17454647 ttgtttcagattgagtatcaagttgaatcttgcagcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctccca 17454558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 459 - 548
Target Start/End: Complemental strand, 17433568 - 17433479
Alignment:
459 ttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctccca 548  Q
    ||||||||| ||||||||||||||||||| |||| || | ||||| |||| | |||||||||||||||||||||||||| ||||||||||    
17433568 ttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctccca 17433479  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 21547011 - 21547063
Alignment:
81 tatatacttgatgtcactgatactttgaaactatcagataattcaaaaggaat 133  Q
    |||||| ||||||| |||||||||||||| ||||||||||| || ||||||||    
21547011 tatatatttgatgtgactgatactttgaagctatcagataagtctaaaggaat 21547063  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 11479291 - 11479357
Alignment:
69 cctgctaagatatatatacttgatgtcactgatactttgaaactatcagataattcaaaaggaatga 135  Q
    |||| |||||| |||||| ||||||| ||||||||||||||  | |||||||| || ||||||||||    
11479291 cctgttaagatttatatatttgatgtgactgatactttgaagatttcagataagtccaaaggaatga 11479357  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 11485520 - 11485600
Alignment:
29 atacactgttaaatgggttgattgggatgattttatagtgcctgctaagatatatatacttgatgtcactgatactttgaa 109  Q
    |||||| ||||| |||||| |||||||  | ||||| ||||||   ||||| |||||| ||||||| ||||||||||||||    
11485520 atacaccgttaagtgggttaattgggaaaagtttatggtgcctctcaagatttatatatttgatgtgactgatactttgaa 11485600  T

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