View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5542-Insertion-2 (Length: 530)
Name: NF5542-Insertion-2
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 330299 - 329776
Alignment:
| Q |
8 |
aagtgttcttaggttgcaatcaaggtcacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatactt |
107 |
Q |
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| T |
330299 |
aagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatactt |
330200 |
T |
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| Q |
108 |
atgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcctatcaaattgaaattttgcacattccattgttggtaa |
207 |
Q |
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| T |
330199 |
atgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaattgaaattttgcacattccattactggtaa |
330100 |
T |
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| Q |
208 |
ttcttaatattttatgtaaaatagcaaaatacagagacttgcaatctattggtnnnnnnn-cttcatgttcatgtcatgatagacagataaatagatcat |
306 |
Q |
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| T |
330099 |
ttcttaatattttatgtaaaatagtaaaatacagagacttgcaatctattggtaaaaaaaactttatgttcatgtcatgatagacagataaatagatcat |
330000 |
T |
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| Q |
307 |
atgcatgaagaagatattgtatgtttgctgcttcgaattgtatgtatatttttcactactcgtactaacttgtttgcgtttgtatattggtgcagttgtg |
406 |
Q |
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| T |
329999 |
atgcatgaagaagatattgtatgtttgctgcttcgaattgtatatatatttttcaccactcgtactaacttgtttgcgtttgtatattggtgcagttgtg |
329900 |
T |
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| Q |
407 |
ctgctctctgctgttgctgcctattagatgcctgcttctaagaagactttactctgcactaataggattgaagtgtgtttaagcattgagctcaatgaaa |
506 |
Q |
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| T |
329899 |
ctgctctctgctgttgctgcctattagatgcctgcttctaagaagactttactctgcactaataggattgaagtgtgtttaagcattgagctcaatgaaa |
329800 |
T |
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| Q |
507 |
attgtttcatgtttcttttctgtg |
530 |
Q |
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| T |
329799 |
attgtttcatgtttcttttctgtg |
329776 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 48030582 - 48030662
Alignment:
| Q |
385 |
tttgtatattggtgcagttgtgctgctctctgctgttgctgcctattagatgcctgcttctaagaagactttactctgcac |
465 |
Q |
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| T |
48030582 |
tttgtaaattgttgcagcttggctgctctctgctgttgctgtctcttggatgcatgcttttgagaagacattactttgcac |
48030662 |
T |
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