View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5542-Insertion-4 (Length: 280)
Name: NF5542-Insertion-4
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 7875944 - 7876218
Alignment:
| Q |
6 |
caatttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatcttt |
105 |
Q |
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| T |
7875944 |
caatttattcaaattgtcatgtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatcttt |
7876043 |
T |
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| Q |
106 |
gtcattttgtagatatctgaaagaagctgccgctgtaaagaaacttggccatcactacattcccaaatttcattaacatttagaaggaagctctgacctt |
205 |
Q |
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| T |
7876044 |
gtcattttgtagatatctgaaagaagctgccgctgtaaagaaacttggccatcactacactcccaaatttcattaacatttagaaggaagctctgacctt |
7876143 |
T |
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| Q |
206 |
caaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaaccccgtttgtctcccataccc |
280 |
Q |
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| T |
7876144 |
caaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaaccccatttgtcccccataccc |
7876218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 7890713 - 7890856
Alignment:
| Q |
6 |
caatttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatcttt |
105 |
Q |
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||||||||||| | ||||||||||||||||| |||| |||||| ||| ||| || ||||| | | ||||||||||||||||||| ||| ||||||||| |
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| T |
7890713 |
caatttattcacaccgtcaagtacaagaaataccttcttatggcaaaggcttctctgtaatatcttctttcctgattcaactgtatctatatgtatcttt |
7890812 |
T |
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| Q |
106 |
gtcattttgtagatatctgaaagaagctgccgctgtaaagaaac |
149 |
Q |
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| T |
7890813 |
gttgttttgcagatgtctaaaagaagttgtcgctggaaagaaac |
7890856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 7890915 - 7890973
Alignment:
| Q |
205 |
tcaaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaacccc |
263 |
Q |
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| T |
7890915 |
tcaaaagtgaaactcatttgattataagtggctttagcaattattgttttaccaacccc |
7890973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 34727615 - 34727734
Alignment:
| Q |
9 |
tttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtc |
108 |
Q |
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| T |
34727615 |
tttattcacatcgtcaagcacaagaaatatcctcttatgacgaagtctttcctgcaatatcatttttcctgattcaactgtttctatctttatttttgtt |
34727714 |
T |
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| Q |
109 |
attttgtagatatctgaaag |
128 |
Q |
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| T |
34727715 |
gttttgtagatatcagaaag |
34727734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 34735372 - 34735491
Alignment:
| Q |
9 |
tttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtc |
108 |
Q |
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|||||||| || ||| || |||||||||||| || |||| |||||||||| | |||| ||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
34735372 |
tttattcacatcgtccagcacaagaaatatcctcttatgacgaagtctttcctgcaatatcatttttcctgattcaactgtatctatctttatttttgtt |
34735471 |
T |
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| Q |
109 |
attttgtagatatctgaaag |
128 |
Q |
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| T |
34735472 |
gttttgtagatatcagaaag |
34735491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 34730773 - 34730892
Alignment:
| Q |
9 |
tttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtc |
108 |
Q |
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|||||||| || ||| || |||||||||||| || |||| | |||||||| | |||| ||||||||||||||||||||| | ||||| ||| ||||| |
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| T |
34730773 |
tttattcacatcgtccagcacaagaaatatcctcttatgacaaagtctttcctgcaatatcatttttcctgattcaactgtttctatctttatttttgtt |
34730872 |
T |
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| Q |
109 |
attttgtagatatctgaaag |
128 |
Q |
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| T |
34730873 |
gttttgtagatatcagaaag |
34730892 |
T |
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