View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5542-Insertion-8 (Length: 246)
Name: NF5542-Insertion-8
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 330299 - 330061
Alignment:
| Q |
8 |
aagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatactt |
107 |
Q |
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| T |
330299 |
aagtgctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatactt |
330200 |
T |
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| Q |
108 |
atgattctcaataaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaattgaaattttgcacattccattactggtaa |
207 |
Q |
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| T |
330199 |
atgattctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaattgaaattttgcacattccattactggtaa |
330100 |
T |
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| Q |
208 |
ttcttaatattttatgtaaaatagtaaaatacagagact |
246 |
Q |
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| T |
330099 |
ttcttaatattttatgtaaaatagtaaaatacagagact |
330061 |
T |
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