View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5542_high_6 (Length: 255)
Name: NF5542_high_6
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542_high_6 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 23120 - 22976
Alignment:
| Q |
111 |
tagtactaaaagaaatctataaatagagcaatttaatgaccacaaaccattcattccacttctccccaatatttatacttttgccaaatatgcattcttt |
210 |
Q |
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| T |
23120 |
tagtactaaaagaaatctataaatagagcaatttaatgaccacaacccattcattccacttctccccaatatttatacttttgccaaatatgcattcttt |
23021 |
T |
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| Q |
211 |
tatattcttgttttccgccctatgttcactttattctccatcctt |
255 |
Q |
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| T |
23020 |
tatattcttgttttccgccctatgttcactttattcaccatcctt |
22976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 15140 - 14965
Alignment:
| Q |
75 |
gaggaatatatttcacatttgaaaagtctcattaactagtactaaaagaaatctataaataga-gcaatttaatgaccacaaaccattcattccacttct |
173 |
Q |
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| T |
15140 |
gaggaatatatctcacatatcaaaagtctcatta--tagtactaaaagaaatctataaatagaagcactt----gaccacaaaccattcattcaacttct |
15047 |
T |
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| Q |
174 |
ccccaatatttatacttttgccaaatatgcattcttttatattcttgttttccgccctatgttcactttattctccatcctt |
255 |
Q |
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| T |
15046 |
cccctatatttatacttttatcaactatgcatgcttttatattcttgttttctgccttatgttcactttatactccatcctt |
14965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 23491 - 23391
Alignment:
| Q |
17 |
aatattttacataatgatttatattataatttgggatagatgagtggtatattcgttggaggaatatatttcacatttgaaaagtctcattaactagtac |
116 |
Q |
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| T |
23491 |
aatattttacataatgatttatattataatttgggacagatgagtggtatattcgttggaggaatatatttcacatttgaaaagtctcattaattagtac |
23392 |
T |
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| Q |
117 |
t |
117 |
Q |
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| T |
23391 |
t |
23391 |
T |
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