View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5542_low_2 (Length: 373)
Name: NF5542_low_2
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 50321892 - 50321536
Alignment:
| Q |
1 |
ctacaagaaaggaaagtattgagagaaaaatagcatctaaataagaagatgatagtagagaattcagaatgaaataaaaacaatacctactgacaagaac |
100 |
Q |
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| T |
50321892 |
ctacaagaaaggaaagtattgagagaaaaatagcatctaaataagaagatgatagtagagaattcagaatgaaataaaaacaatacctactgacaagaac |
50321793 |
T |
|
| Q |
101 |
attttagcaaaatttggtcagaaagaattatttagtaaaaattgatcagacaacaatttcaaatacatggcatttaaatttcatcagcactcaacttggg |
200 |
Q |
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| T |
50321792 |
attttagcaaaatttggtcagaaagaattatttagtataaattgatcagacaacagtttcaaatacatggcatttaaatttcatcagcactcaacttggg |
50321693 |
T |
|
| Q |
201 |
aaagcaagttcctcagcagcatcctccttcccccatcgacgaattttatctcgcatgctactcataaattattgtcagtccttttgtaactatactttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50321692 |
aaagcaagttcctcagcagcatcctccttcccccatcgacgaattttttctcgcatgctactcaaaaattattgtcagtccttttgtaactatactttca |
50321593 |
T |
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| Q |
301 |
agtttgaacaatagaagcttcccgaatttcctgctctgttagtagcttcgtggtatg |
357 |
Q |
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| T |
50321592 |
agtttgaacaatagaagcttcccgaatttcctgctctgttagtagcttcgtagtatg |
50321536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 137 - 357
Target Start/End: Complemental strand, 2864480 - 2864261
Alignment:
| Q |
137 |
aaaaattgatcagacaacaatttcaaatacatggcatttaaatttcatcagcactcaacttgggaaagcaagttcctcagcagcatcctccttcccccat |
236 |
Q |
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|||||||||| ||||||||||||||| ||||| || || |||||||||||||||||||||||||||| |||| |||||||||||| | |||||||| ||| |
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| T |
2864480 |
aaaaattgattagacaacaatttcaa-tacatagcgttaaaatttcatcagcactcaacttgggaaatcaagatcctcagcagcagcatccttccctcat |
2864382 |
T |
|
| Q |
237 |
cgacgaattttatctcgcatgctactcataaattattgtcagtccttttgtaactatactttcaagtttgaacaatagaagcttcccgaatttcctgctc |
336 |
Q |
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| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
2864381 |
caacgaattttatctcgcatgctactcgtaatttattgtcggtccttttgtaactatattttcaagattaaacaatagaagcttcccgaatttcctgctc |
2864282 |
T |
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| Q |
337 |
tgttagtagcttcgtggtatg |
357 |
Q |
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||||||||||||||| ||||| |
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| T |
2864281 |
tgttagtagcttcgtagtatg |
2864261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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