View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5542_low_3 (Length: 350)

Name: NF5542_low_3
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5542_low_3
NF5542_low_3
[»] chr1 (10 HSPs)
chr1 (116-291)||(50321998-50322173)
chr1 (153-225)||(34374137-34374209)
chr1 (1-44)||(50321883-50321926)
chr1 (292-340)||(50322206-50322254)
chr1 (159-225)||(7991518-7991584)
chr1 (148-226)||(15606323-15606401)
chr1 (148-226)||(28067478-28067556)
chr1 (158-266)||(22925211-22925320)
chr1 (148-188)||(3032174-3032214)
chr1 (148-208)||(8344566-8344626)
[»] chr5 (3 HSPs)
chr5 (150-201)||(18899231-18899282)
chr5 (148-218)||(20981259-20981329)
chr5 (148-226)||(39159729-39159807)
[»] chr6 (2 HSPs)
chr6 (148-226)||(2732925-2733003)
chr6 (159-273)||(430981-431096)
[»] chr4 (2 HSPs)
chr4 (152-217)||(33714230-33714295)
chr4 (232-273)||(38596788-38596829)
[»] chr2 (5 HSPs)
chr2 (143-226)||(11530013-11530096)
chr2 (148-223)||(44458225-44458300)
chr2 (148-182)||(33525030-33525064)
chr2 (148-189)||(8818257-8818298)
chr2 (145-178)||(34786621-34786654)
[»] chr7 (4 HSPs)
chr7 (149-183)||(22550050-22550084)
chr7 (145-178)||(1668360-1668393)
chr7 (232-273)||(34925277-34925318)
chr7 (174-226)||(21451518-21451570)
[»] chr3 (4 HSPs)
chr3 (148-217)||(10275821-10275891)
chr3 (148-217)||(54842199-54842268)
chr3 (148-200)||(18403365-18403417)
chr3 (158-226)||(35303946-35304014)
[»] chr8 (2 HSPs)
chr8 (158-226)||(30560087-30560156)
chr8 (157-217)||(45371101-45371161)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 116 - 291
Target Start/End: Original strand, 50321998 - 50322173
Alignment:
Q  116 agcagtgttgtcaaataacggttatcctgttgtagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaa 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  50321998 agcagtgttgtcaaatagcggttatcctgttgtagcatagtggaatttgaacaaaccactattgttctacgatacacaatttagtataaaatattgtcaa 50322097  T
Q  216 attgcagctatgatgtgctatagcattgtaccgtagcagaatttaaacaaactgctatcttaatgatatgcgattg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  50322098 attgcagctatgatgtgctatagcattgtaccgtagcagaatttaaacaaactgctatttgaatgatatgcgattg 50322173  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 34374209 - 34374137
Alignment:
Q  153 tagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagcta 225  Q
    |||||||||||||||| || |||||||||||| |||| || |||| ||| ||||| |||||||||||||||||    
T  34374209 tagtggaatttgaacagactactattgttctatgatacgcgatttggtacaaaatgttgtcaaattgcagcta 34374137  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50321883 - 50321926
Alignment:
Q  1 tttcttgtagcttataatatcgtaatctattaaaataataataa 44  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  50321883 tttcttgtagcttgtaatatcgtaatctattaaaataataataa 50321926  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 50322206 - 50322254
Alignment:
Q  292 tgtggtgtctgcccatggactagttctgcatttaagttgaagttttcat 340  Q
    ||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  50322206 tgtggtgtccgcccatggactagttctgcgtttaagttgaaattttcat 50322254  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 7991518 - 7991584
Alignment:
Q  159 aatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagcta 225  Q
    ||||||||||||||||||||||||   |||| || |||||||| | |||||||| |||| |||||||    
T  7991518 aatttgaacaaaccactattgttccgtgatacgccatttagtacataatattgtgaaatagcagcta 7991584  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 15606401 - 15606323
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    |||||| ||| ||||| |||||| |||||||||||| | ||| || |||||||| ||||| |||||||||  |||||||    
T  15606401 tagcattgtgaaatttaaacaaatcactattgttctgctatatgctatttagtacaaaatgttgtcaaataacagctat 15606323  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 28067478 - 28067556
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    |||||||| |||||||||  ||| |||| ||||| | ||||| |  |||| ||||||||||||||| ||||||||||||    
T  28067478 tagcataggggaatttgatgaaatcactgttgttttgcgatatgttatttggtataaaatattgtcgaattgcagctat 28067556  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 22925320 - 22925211
Alignment:
Q  158 gaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat-gatgtgctatagcattgtaccgtagcagaa 256  Q
    |||||| |||||||||||||||||| |||||| | ||| || || ||| ||||||||| | |||||||| |  |  |||||||| | || ||||||||||    
T  22925320 gaattttaacaaaccactattgttccacgatacgtaatctaatacaaagtattgtcaagtagcagctatagcagctctatagcaatatagcgtagcagaa 22925221  T
Q  257 tttaaacaaa 266  Q
    ||| ||||||    
T  22925220 tttgaacaaa 22925211  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 3032214 - 3032174
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgat 188  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  3032214 tagcgtagtggaatttgaacaaacccctattgttccacgat 3032174  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 8344566 - 8344626
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaata 208  Q
    ||||||||  ||||||||||||||||||||| ||| || ||| || |||||||| ||||||    
T  8344566 tagcatagcagaatttgaacaaaccactatttttccacaataagctatttagtacaaaata 8344626  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 18899282 - 18899231
Alignment:
Q  150 gcatagtggaatttgaacaaaccactattgttctacgataggcaatttagta 201  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  18899282 gcatagtggaattttaacaaaccactattgttctgcgatacgcaatttagta 18899231  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 20981259 - 20981329
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaatt 218  Q
    |||||||  ||||||||||| || |||||||||||| | ||| || |||||||||||||||||||||||||    
T  20981259 tagcataaaggaatttgaactaatcactattgttctgcaatacgctatttagtataaaatattgtcaaatt 20981329  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 39159807 - 39159729
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    |||| ||| ||||||| |||||||||||||||||||  |||| ||||||||||| |||   ||| ||||| ||||||||    
T  39159807 tagcgtagcggaattttaacaaaccactattgttctgtgatatgcaatttagtacaaagcgttgacaaatagcagctat 39159729  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 2732925 - 2733003
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    |||| ||||| |||||||||||| | |||||||| | ||||| || |||||||| ||||| ||||||||| ||||||||    
T  2732925 tagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctat 2733003  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 430981 - 431096
Alignment:
Q  159 aatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat-gatgtgctatagcattgtaccgtagcagaat 257  Q
    |||||||||||| ||||||||||| |  |||  | | |||||| |||||||||| |||| || ||||| |||| ||||||||| |||  |||||||||||    
T  430981 aatttgaacaaatcactattgttccattataaactacttagtacaaaatattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaat 431080  T
Q  258 ttaaacaaactgctat 273  Q
    || ||  |||||||||    
T  431081 ttgaatgaactgctat 431096  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 33714295 - 33714230
Alignment:
Q  152 atagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaat 217  Q
    ||||||||||||||||||| | || |||||| |||||| || |||||||| |||||||||| ||||    
T  33714295 atagtggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgtgaaat 33714230  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 38596788 - 38596829
Alignment:
Q  232 gctatagcattgtaccgtagcagaatttaaacaaactgctat 273  Q
    ||||||||| |||| ||||||||||||| |||||||||||||    
T  38596788 gctatagcactgtaacgtagcagaatttgaacaaactgctat 38596829  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 11530013 - 11530096
Alignment:
Q  143 tgttgtagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    |||||| |||||| | |||||||||||| |||||||||||| |||||  | |||||||| | |||||||| |||| || |||||    
T  11530013 tgttgttgcatagcgaaatttgaacaaatcactattgttctgcgatacactatttagtacataatattgtgaaatagcggctat 11530096  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 44458300 - 44458225
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagc 223  Q
    ||||||||||||||| ||||||||| |||||||||  |||||    |||||||| ||| ||||||||||| |||||    
T  44458300 tagcatagtggaattcgaacaaaccgctattgttccgcgatacaatatttagtacaaagtattgtcaaatagcagc 44458225  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 33525064 - 33525030
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttc 182  Q
    ||||||||||||||||| |||||||||||||||||    
T  33525064 tagcatagtggaatttggacaaaccactattgttc 33525030  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 8818298 - 8818257
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgata 189  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  8818298 tagcatagcggaatttgaacaaacctctatagttctacgata 8818257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 34786654 - 34786621
Alignment:
Q  145 ttgtagcatagtggaatttgaacaaaccactatt 178  Q
    ||||||||||||| ||||||||||||||||||||    
T  34786654 ttgtagcatagtgaaatttgaacaaaccactatt 34786621  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 22550050 - 22550084
Alignment:
Q  149 agcatagtggaatttgaacaaaccactattgttct 183  Q
    ||||||||||||| |||||||||||||||||||||    
T  22550050 agcatagtggaatctgaacaaaccactattgttct 22550084  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 1668393 - 1668360
Alignment:
Q  145 ttgtagcatagtggaatttgaacaaaccactatt 178  Q
    |||||||||||||||||||||||||||| |||||    
T  1668393 ttgtagcatagtggaatttgaacaaaccgctatt 1668360  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 34925318 - 34925277
Alignment:
Q  232 gctatagcattgtaccgtagcagaatttaaacaaactgctat 273  Q
    |||||||||||||| | ||||||||||| |||||||||||||    
T  34925318 gctatagcattgtagcatagcagaatttgaacaaactgctat 34925277  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 21451570 - 21451518
Alignment:
Q  174 ctattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    |||||||||| ||||| ||||||||||| ||||| ||||||||| || |||||    
T  21451570 ctattgttctgcgatacgcaatttagtacaaaatcttgtcaaatagcggctat 21451518  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 10275891 - 10275821
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagta-taaaatattgtcaaat 217  Q
    ||||||||||||||||||||||| || | ||||||| ||||| || ||||| ||  |||||||||||||||    
T  10275891 tagcatagtggaatttgaacaaatcattgttgttctgcgatatgctatttattacaaaaatattgtcaaat 10275821  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 54842268 - 54842199
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaat 217  Q
    |||||||| |||||||  | ||||| ||||||||||  |||| || |||||||||||||| |||||||||    
T  54842268 tagcatagcggaatttagagaaaccgctattgttctgtgatacgctatttagtataaaatgttgtcaaat 54842199  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 18403417 - 18403365
Alignment:
Q  148 tagcatagtggaatttgaacaaaccactattgttctacgataggcaatttagt 200  Q
    |||||||| ||||||| ||||||||||||||||| | |||||  |||||||||    
T  18403417 tagcatagcggaattttaacaaaccactattgttttgcgatacacaatttagt 18403365  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 35304014 - 35303946
Alignment:
Q  158 gaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaattgcagctat 226  Q
    ||||||||| ||| |||||||||||| | |||  | |||||||| |||| ||||||||||||| |||||    
T  35304014 gaatttgaaaaaatcactattgttctcccatacactatttagtacaaaacattgtcaaattgcggctat 35303946  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 30560087 - 30560156
Alignment:
Q  158 gaatttgaacaaaccactattgttctacgataggcaatttagt-ataaaatattgtcaaattgcagctat 226  Q
    ||||||| |||||||||||||||| | |||||  | ||||||| | ||||| ||||||||||||||||||    
T  30560087 gaatttggacaaaccactattgttttgcgatacactatttagtaaaaaaatgttgtcaaattgcagctat 30560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 45371161 - 45371101
Alignment:
Q  157 ggaatttgaacaaaccactattgttctacgataggcaatttagtataaaatattgtcaaat 217  Q
    |||||||| |||||||||||||||||  | ||| || |||||||| ||||| |||||||||    
T  45371161 ggaatttggacaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaat 45371101  T

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