View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5542_low_5 (Length: 291)
Name: NF5542_low_5
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 41094861 - 41094600
Alignment:
| Q |
14 |
aagaatatctatgcaatttgacaaattcctaaacaacagtagatatttggcatatggaagatttgtggatcttgtctaccaaaatggtacacggtggagc |
113 |
Q |
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| T |
41094861 |
aagaatatctatgcaatttgacaaattcctaaacaacagtagatatttggcatatggaagatttgtggatcttgtctaccaaaatggtacacggtggagc |
41094762 |
T |
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| Q |
114 |
atgtatgccctagtagagaagtcaaacagctaatcatgacgataactctcaaataaaatcccaaagccactctaccctaaaaagagcacatacggccttc |
213 |
Q |
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| T |
41094761 |
atgtatgccctagtagagaagtcaaacagctaatcatgacgataactctcaaataaaatcccaaagccactctaccctaaaaagagcacatacggccttc |
41094662 |
T |
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| Q |
214 |
ccctccattctcctagattcctcaatattcaccctatagtatctgctcgacaagagtacatg |
275 |
Q |
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| T |
41094661 |
ccctccattctcctagattcctcaatactcaccctatagtatctgctcgacaagagtacatg |
41094600 |
T |
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