View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5542_low_8 (Length: 238)
Name: NF5542_low_8
Description: NF5542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5542_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1629316 - 1629085
Alignment:
| Q |
1 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1629316 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttgtattttggtatagctatatctcttcattaattcaattattctacata |
1629217 |
T |
|
| Q |
101 |
gttatctgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagagat---attattcatattctttaatt |
197 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1629216 |
gttatttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattcatattctttaatt |
1629117 |
T |
|
| Q |
198 |
ttgtactacttaacaagttcaactttgatgat |
229 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
1629116 |
ttgtactactttacaagttcaactttgatgat |
1629085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 1606018 - 1605891
Alignment:
| Q |
1 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||| ||| |||||||| ||| ||||| ||| || |
|
|
| T |
1606018 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttatgttgtgctatagc--tatttcttcattgcctcagttattgtactta |
1605921 |
T |
|
| Q |
101 |
gttatctgtaattaaattcattgtaattct |
130 |
Q |
| |
|
|| | ||||||||| |||||||||||||| |
|
|
| T |
1605920 |
attctttgtaattaagttcattgtaattct |
1605891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 10821438 - 10821514
Alignment:
| Q |
107 |
tgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatattatt |
183 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821438 |
tgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatattatt |
10821514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1623140 - 1623071
Alignment:
| Q |
1 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctat |
70 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || ||||||||| |
|
|
| T |
1623140 |
aacatggttggctacaactaccgtgccatttacatctggtctttgatcatttatgttgtgctatagctat |
1623071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10821382 - 10821435
Alignment:
| Q |
1 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttgt |
54 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821382 |
aacatggttggctaaaactactgtgccatttacatctggtctttgatcatttgt |
10821435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18780834 - 18780707
Alignment:
| Q |
1 |
aacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacata |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||| | || || |||||| ||| |||||||| ||||||||| ||| || |
|
|
| T |
18780834 |
aacatggctggctacaactactgtgccatttacatctggtctttgatcttttatgttgtgctatagc--tatttcttcattgcttcaattattgtactta |
18780737 |
T |
|
| Q |
101 |
gttatctgtaattaaattcattgtaattct |
130 |
Q |
| |
|
|| | |||||||||||||||||||||||| |
|
|
| T |
18780736 |
attctttgtaattaaattcattgtaattct |
18780707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University