View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543-Insertion-1 (Length: 972)
Name: NF5543-Insertion-1
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 56 - 646
Target Start/End: Original strand, 42691984 - 42692573
Alignment:
| Q |
56 |
gtacttcaaattcaagattcgtcccaaggaccgattaatctaacacttacaatttaaccgtccacttgttggttc-agtttaaagccaactttgtatgga |
154 |
Q |
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| T |
42691984 |
gtacttcaaattcaagattcgtcccaaggaccgattaatctaacacgtacaattttaccgtccacttgttggttctagtttaaagccaactttgtatgga |
42692083 |
T |
|
| Q |
155 |
ggcagcccaccgtaattgacattagaggaaatttaacatttgaaaatgttaatttgtttattagtagtattaggaagttatctcagcctttattttttct |
254 |
Q |
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| T |
42692084 |
ggcagcccaccgaaattgacattagaggaaatttaacatttgaaaatgttaatttgtttattagtagtattaggaagttatctctgcctttattttttct |
42692183 |
T |
|
| Q |
255 |
tctataaactgaaaactatcccttagtaatggttagattaaggctctgtttggcaatgctggattttaagcctatagtctataagcttgtatgagaaaaa |
354 |
Q |
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| T |
42692184 |
tgcataaactgaaaactatcccttagtaatggttagattaaggctctgtttgccaatgctggattttaagcttatagtctataagcttatatgagaaaaa |
42692283 |
T |
|
| Q |
355 |
cagacttgtttcannnnnnncttcctcatgagattatagcttactgttattaccttctaacttacttgataagttaattgaattagcttattgcttaaat |
454 |
Q |
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| T |
42692284 |
cagacttgtttcatttttttcttcctcatgagattatagcttactgttattaccttctaacttacttgataagttaattgaattagcttattgcttaaat |
42692383 |
T |
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| Q |
455 |
ctgatagcttacaactttttctctctattttacccggtcatctcttannnnnnnnaaaaataacgttaattaaacatatcgttttttatgttattttgca |
554 |
Q |
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| T |
42692384 |
ctgatagcttacaactttttctctctattttacccggtcatctcttattttttttaaaaataatgttaattaaacatatcgttttttatgttattttgca |
42692483 |
T |
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| Q |
555 |
tttatatgctagttcaattgttaacttcaccaaacactataaattcaaataactaacttatctactataatgctaacttataaactattcgc |
646 |
Q |
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| T |
42692484 |
ttt-tatgctagttcaatcgttaacttcactaaatactataaattcaattaactaacttatctactataa-gctagtttataaactattcgc |
42692573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 818 - 895
Target Start/End: Original strand, 42692574 - 42692651
Alignment:
| Q |
818 |
atttaatatcaatgttgtagaagttatatatttgttttgatccatcaatatatcaatggagtattcattatgctatga |
895 |
Q |
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| T |
42692574 |
atttaatatcaatgttgtagaagttatatatttgttttgatccatcaatatgtcaatggagtattcattatgctatga |
42692651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 816 - 894
Target Start/End: Original strand, 42714041 - 42714119
Alignment:
| Q |
816 |
gaatttaatatcaatgttgtagaagttatatatttgttttgatccatcaatatatcaatggagtattcattatgctatg |
894 |
Q |
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| T |
42714041 |
gaatttaatacctaagttttcgaagttctatatttgttttgatccatcaatatatcaatggagtattcattatactatg |
42714119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 616
Target Start/End: Complemental strand, 28870523 - 28870462
Alignment:
| Q |
555 |
tttatatgctagttcaattgttaacttcaccaaacactataaattcaaataactaacttatc |
616 |
Q |
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| T |
28870523 |
tttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactagcttatc |
28870462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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