View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543-Insertion-10 (Length: 225)
Name: NF5543-Insertion-10
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543-Insertion-10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 13115039 - 13115249
Alignment:
| Q |
14 |
gcacgacgcgacagcataacaactgacagagagcaagatcttgaggaatgtggcttcaggtgcaggtactgatttccccttattcgtcgtactttgagtg |
113 |
Q |
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| T |
13115039 |
gcacgacgcgacgg-atagcagctgacagagagcaagatcttgaggaatgtggcttcaggtgcaggtactgatttccccctattcgtcgtactttgagtg |
13115137 |
T |
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| Q |
114 |
ttttctttatgcaaattgatcttgggacaaaattttcccatcttatgatgtcttcaaagccttattcatcgacaatcttcattccatatcttctaaagca |
213 |
Q |
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| T |
13115138 |
ttttctttatgcgaattgatcttgggacaaaatttccgcatcttatgatgtcttcaaagccttattcattgacaatcttcattccatatcttctaaagca |
13115237 |
T |
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| Q |
214 |
tttttcaacatt |
225 |
Q |
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| T |
13115238 |
ttttttaacatt |
13115249 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 1870991 - 1871070
Alignment:
| Q |
99 |
gtcgtactttgagtgttttctttatgcaaattgatcttgggacaaaattttcccatcttatgatgtcttcaaagccttatt |
179 |
Q |
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| T |
1870991 |
gtcgttctttgagtgtttttcttcttcgacttgatcttgggacaaattttccccacctt-taatgtcttcaaagccttatt |
1871070 |
T |
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