View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543-Insertion-11 (Length: 145)
Name: NF5543-Insertion-11
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543-Insertion-11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 4e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 9255419 - 9255556
Alignment:
| Q |
8 |
ataccaattggccataagcccaatagccaccaatagctaagggaaataagcaggcagcaatgagtgtgtaagaagccttcactcctttccacatgggcac |
107 |
Q |
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| T |
9255419 |
ataccaattgcccataagcccaatagccaccaatagctaagggaaataagcaggcagcaatgagtgtgtaagaagccttcactcctttccacatgggcac |
9255518 |
T |
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| Q |
108 |
atgtgatggatgcttctcacttgaaggcatagtagcct |
145 |
Q |
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| T |
9255519 |
atgtgatggatgcttctcacttgaaggcatagtagcct |
9255556 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 9239489 - 9239625
Alignment:
| Q |
9 |
taccaattggccataagcccaatagccaccaatagctaagggaaataagcaggcagcaatgagtgtgtaagaagccttcactcctttccacatgggcaca |
108 |
Q |
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| T |
9239489 |
taccagttggccataagcccaatagccaccgatggctacgggaaataagcaggcggcaattagtgtgtaagcaatcttgactcctttccacatgggaacg |
9239588 |
T |
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| Q |
109 |
tgtgatggatgcttctcacttgaaggcatagtagcct |
145 |
Q |
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| T |
9239589 |
tgtgatggatgcttctcacttgaaggcatagtagcct |
9239625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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