View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543-Insertion-2 (Length: 805)
Name: NF5543-Insertion-2
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 8 - 805
Target Start/End: Original strand, 40750131 - 40750928
Alignment:
| Q |
8 |
gttcttgtgtgtcttgttactatacttgtttttcaattgtattggaaaacattttctctctttgatttgtctagtagattcattggaaacaatgttactt |
107 |
Q |
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| T |
40750131 |
gttcttgtgtgtcttgttactatacttgtttttcaatcgtattggaaaacattttctctcttggatttgtctagtagattcattggaaacaatgttactt |
40750230 |
T |
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| Q |
108 |
tacaatctaattattcatttcaatatgaagtggaaaatcatgaaaaagaaattcacaatttcaatcaaaaaatactgcttgatgattccacacagaaggt |
207 |
Q |
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| T |
40750231 |
tacaatctaattattcatttcaatatgaagtggaaaatcatgaaaaagaaattcacaatttcaatcaaaaaatactgcttgatgattccacacagaaggt |
40750330 |
T |
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| Q |
208 |
tagaaaatttgatgaaaaacacaatattcaacaccagagaaaagggtttccttcaaagggaacaaaaggtctgaatgcagattggagcatttatcatgat |
307 |
Q |
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| T |
40750331 |
tagagaatttgatgaaaaacacaatattcaacaccagagaaaagggtttccttcaaagggaacaaaaggtctgaatgcagattggagcatttatcatgat |
40750430 |
T |
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| Q |
308 |
aatgtaaaaaagtcttcaaatggaagtggaatacaaagtatggaaattgaccctcaaaataaggaaaaacctcagttactgaaaacttctttgttgggtt |
407 |
Q |
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| T |
40750431 |
aatgtaaaaaagtcttcaaatggaagtggaatacaaagtatggaaattgaccctcaaaataaggaaaaacctcagttactgaaaacttctttgttgggtt |
40750530 |
T |
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| Q |
408 |
cttcgatcacgatgcagccaacttcattaactcagctgtactctcaattgattcaaagttttaattcttcttctagggtatgaactatgaagttcagttt |
507 |
Q |
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| T |
40750531 |
cttcgatcacgatgcagccaacttcattaactcggctgtactctcaattgattcaaagttttaattcttcttctagggtatgaactatgaagttcagttt |
40750630 |
T |
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| Q |
508 |
ttgttgttctaacgtacgattgaatcattgttgaatatgtatgtacttctaattttctcattttatgtattgatgacagaagccaaagtcgtcttcgcaa |
607 |
Q |
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| T |
40750631 |
ttgttgttctaacgtacgattgaatcattgttgaatatgtatgtacttctaattttctcattttatgtattgatgacagaagccaaagtcgtcttcgcaa |
40750730 |
T |
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| Q |
608 |
cgtgaccgtgaactcttagctgcaaaaatagagattgaaaatgcaaatgtcttgttgaagtcttcaggacttcatgcacctgtttaccgagaagtttcca |
707 |
Q |
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| T |
40750731 |
cgtgaccgtgaactcttagctgcaaaaatagagattgaaaatgcaaatgtcttgttgaagtcttcaggacttcatgcacctgtttaccgagaagtttcca |
40750830 |
T |
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| Q |
708 |
aattttcaaggtacactgacagttattcaatttgttagatgttagctgtatacgattgcattgtaaactattcttttttcattcttatactctcagat |
805 |
Q |
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| T |
40750831 |
aattttcaaggtacactgacagttgttcaatttgttagatgttagctgtatacgattgcattgtaaactattcttttttcattcttatactctcagat |
40750928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 5255473 - 5255247
Alignment:
| Q |
8 |
gttcttgtgtgtcttgttactatacttgtttttcaattgtattggaaaacattttctctctttgatttgtctagtagattcattggaaacaatgttactt |
107 |
Q |
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| T |
5255473 |
gttcttgtgtttgttgctactgtacttgttttccaatcttactggaaaatgttttctctcttggatttgtctagtagatttattggaaacaatgtta-tt |
5255375 |
T |
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| Q |
108 |
tacaatctaattattcatttcaatatgaagtggaaaatcatgaaaaagaaattcacaatttcaatcaaaaaatactgcttgatgattccacacagaaggt |
207 |
Q |
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| T |
5255374 |
ttcagtctggtaattcactacaatatgaagtggaaaatcatgaaaaagaaattcacactttcaataaaaaaata---ctagatgattctgctcaaacagt |
5255278 |
T |
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| Q |
208 |
tagaaaatttgatgaaaaacacaatattcaa |
238 |
Q |
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| T |
5255277 |
tagagaatttgatgaaaatcacaatattcaa |
5255247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 54434530 - 54434435
Alignment:
| Q |
8 |
gttcttgtgtgtcttgttactatacttgtttttcaattgtattggaaaacattttctctctttgatttgtctagtagattcattggaaacaatgtt |
103 |
Q |
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| T |
54434530 |
gttcttgtgtttgttgctactgtatttgttttccaatcttactggaaaacattttctctcttggatttgtctagtagatttattggaaacaatgtt |
54434435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 677
Target Start/End: Complemental strand, 33002887 - 33002817
Alignment:
| Q |
607 |
acgtgaccgtgaactcttagctgcaaaaatagagattgaaaatgcaaatgtcttgttgaagtcttcaggac |
677 |
Q |
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| T |
33002887 |
acgtgatcgtgaactcttatctgcataactagagattaaaaatgcaaatgtcttgtcaaattcttcaggac |
33002817 |
T |
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