View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5543-Insertion-3 (Length: 751)

Name: NF5543-Insertion-3
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5543-Insertion-3
NF5543-Insertion-3
[»] chr8 (10 HSPs)
chr8 (8-706)||(38327397-38328104)
chr8 (460-627)||(7531687-7531857)
chr8 (699-736)||(38328112-38328149)
chr8 (595-662)||(5908682-5908747)
chr8 (589-656)||(39051182-39051249)
chr8 (594-662)||(16917218-16917285)
chr8 (588-639)||(29520707-29520758)
chr8 (588-657)||(30559732-30559801)
chr8 (460-559)||(30812859-30812960)
chr8 (595-656)||(41971959-41972020)
[»] chr7 (12 HSPs)
chr7 (568-704)||(48736053-48736192)
chr7 (598-657)||(42187509-42187568)
chr7 (532-657)||(38135330-38135455)
chr7 (532-615)||(28359338-28359423)
chr7 (594-662)||(6420670-6420738)
chr7 (531-657)||(28628049-28628176)
chr7 (596-662)||(48202884-48202950)
chr7 (515-658)||(18605245-18605390)
chr7 (515-658)||(18637600-18637745)
chr7 (515-658)||(18651034-18651179)
chr7 (588-657)||(25579251-25579320)
chr7 (588-657)||(39811996-39812065)
[»] chr3 (6 HSPs)
chr3 (596-662)||(21200582-21200648)
chr3 (532-662)||(11581478-11581609)
chr3 (588-639)||(42026710-42026761)
chr3 (593-638)||(34719251-34719296)
chr3 (588-657)||(45289265-45289334)
chr3 (588-657)||(54128417-54128486)
[»] chr5 (11 HSPs)
chr5 (487-662)||(1525678-1525855)
chr5 (596-662)||(42199320-42199386)
chr5 (568-662)||(21952391-21952486)
chr5 (596-657)||(11675549-11675610)
chr5 (594-639)||(14667828-14667873)
chr5 (487-662)||(14749341-14749518)
chr5 (571-662)||(2712978-2713070)
chr5 (588-656)||(7359434-7359501)
chr5 (587-639)||(18351080-18351132)
chr5 (588-662)||(43475274-43475348)
chr5 (588-657)||(41109914-41109983)
[»] chr4 (13 HSPs)
chr4 (588-657)||(28497528-28497597)
chr4 (487-662)||(46372058-46372235)
chr4 (568-698)||(17900475-17900609)
chr4 (460-662)||(31961309-31961514)
chr4 (588-659)||(34233198-34233269)
chr4 (596-662)||(54470241-54470307)
chr4 (487-662)||(31897499-31897676)
chr4 (532-638)||(28351617-28351724)
chr4 (568-662)||(51550401-51550496)
chr4 (598-656)||(17666227-17666285)
chr4 (568-661)||(26356654-26356748)
chr4 (596-662)||(46715554-46715620)
chr4 (596-657)||(31339575-31339636)
[»] chr1 (9 HSPs)
chr1 (487-662)||(40419673-40419850)
chr1 (588-660)||(2544635-2544707)
chr1 (599-657)||(32404711-32404769)
chr1 (537-657)||(5338763-5338884)
chr1 (587-699)||(39422216-39422330)
chr1 (599-699)||(43423713-43423816)
chr1 (531-662)||(26016471-26016603)
chr1 (596-654)||(13827752-13827810)
chr1 (588-657)||(48431580-48431649)
[»] chr6 (8 HSPs)
chr6 (531-657)||(9593824-9593949)
chr6 (594-662)||(6907007-6907075)
chr6 (571-658)||(14389324-14389412)
chr6 (594-657)||(24665849-24665913)
chr6 (542-657)||(32913389-32913505)
chr6 (594-661)||(34676-34743)
chr6 (588-639)||(579475-579526)
chr6 (570-656)||(9749379-9749466)
[»] chr2 (7 HSPs)
chr2 (515-658)||(42543273-42543418)
chr2 (596-662)||(13240927-13240993)
chr2 (588-657)||(3481180-3481249)
chr2 (588-657)||(43752121-43752190)
chr2 (587-639)||(42092574-42092626)
chr2 (603-657)||(6219006-6219060)
chr2 (487-662)||(44437792-44437969)
[»] scaffold0003 (1 HSPs)
scaffold0003 (587-657)||(346946-347016)


Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 8 - 706
Target Start/End: Original strand, 38327397 - 38328104
Alignment:
Q  8 atgggaaaaataatgacatagttctgtaacatcacttcgattattttattttgcgtaattttattttcatagcttaaaccttcaatttcgttattgaaat 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38327397 atgggaaaaataatgacatagttatgtaacatcacttcgattattttattttgcataattttattttcatagcttaaaccttcaatttcgttattgaaat 38327496  T
Q  108 tgtacctcctcttcttgttatcgtttttgaacttgctcgagtgcaaatggacacaaaggatatcgtaaaaacacaatatatggaggattctaaaatattg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327497 tgtacctcctcttcttgttatcgtttttgaacttgctcgagttttgatggacacaaaggatatcgtaaaaacacaatatatggaggattctaaaatattg 38327596  T
Q  208 tcaaaaaattgagatagcaattgtcataagttggaactagtattttagagtacaaaggtaggatataccttaaataccatatgcaaagtatagaagatct 307  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  38327597 tcaaaaaattgagatagcaattgtcataaactggaactagtattttagagtacaaaggtaggatataacttaaataccatatggaaagtatagaagatct 38327696  T
Q  308 tatatttaa-------gaggctaaaaattcaatgaatgtttttcatacaaaaagatgcttctcagtacatcgataaaaacctaagcggtacattgagaaa 400  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38327697 tatatttaagaattaagaggctaaaaattcaatgaatgtttttcatacaaaaagatgtttctcagtacatcgataaaaacctaagcggtacattgagaaa 38327796  T
Q  401 tttgagtcccgcagccaccctccaacaacaatcaa-----gtcttgctaattgagattgtttatatgaattaaacgacattatagtgtttttcaaaaacc 495  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38327797 tttgagtcccgcagccaccctccaacaacaatcaagtcttgtcttgctaattgagattgtttatatgaattaaacgacattatagtgttcttcaaaaacc 38327896  T
Q  496 atatctttttcaaactcgattatttctagattcttctaatactttcttttataatttttctaggcctatttgtacctctaatgatctgactccctccgtc 595  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||     
T  38327897 atatctttttcaaactcgattatttctagatttttctaatagttt-ttttatgatttttctagacctatttgtacctctaatgatctgactccctctgta 38327995  T
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctagctagtctcttttctactgtagttgttaccccaa 695  Q
    ||||||||||||||||||  |||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327996 tgatctactctccttactatataatctacaggtct--tctctacttatccaaaccacctaagtctagctagtctcttttctactgtagttgttaccccaa 38328093  T
Q  696 ctctttctaat 706  Q
    |||||||||||    
T  38328094 ctctttctaat 38328104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 460 - 627
Target Start/End: Original strand, 7531687 - 7531857
Alignment:
Q  460 atgaattaaacgacattatagtgtttt-tcaaaaaccatatctttttcaaactcgattatttctagattcttc-taatactttcttttataatttttcta 557  Q
    |||||| ||||||||  |||||||| | ||||||||||| ||||| || |||||  |||| ||||||| |||| ||||| |||||  |||| ||||||||    
T  7531687 atgaatcaaacgacaccatagtgttctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcgtatagtttttcta 7531786  T
Q  558 ggcctatttgtacctctaatgatctgactccc-tccgtctgatctactctccttactgcataatctacatg 627  Q
    || |||    |||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  7531787 ggtctacccttacctctagtgatctgactcccctccatctgatctactctccttactacataatccacatg 7531857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 699 - 736
Target Start/End: Original strand, 38328112 - 38328149
Alignment:
Q  699 tttctaattctatcctctttagtctcaccatacatcca 736  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38328112 tttctaattctatcctctttagtctcaccatacatcca 38328149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 662
Target Start/End: Complemental strand, 5908747 - 5908682
Alignment:
Q  595 ctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||||||||||||||||| || |||||||| | ||||||||||  ||||||||||| ||||||||||    
T  5908747 ctgatctactctccttactacaaaatctacaggtcttctctcta--tatccaaaccaactaagtctag 5908682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 589 - 656
Target Start/End: Complemental strand, 39051249 - 39051182
Alignment:
Q  589 ctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaa 656  Q
    |||| |||||| ||||||||| |||||| |||||||||| ||| ||||||| || |||||||||||||    
T  39051249 ctccatctgatttactctcctcactgcaaaatctacatgacttttctctacatacccaaaccacctaa 39051182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 662
Target Start/End: Complemental strand, 16917285 - 16917218
Alignment:
Q  594 tctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||||||||||||||||||| || |||||||| ||||||||| ||| |  |||||||||||||| ||||    
T  16917285 tctgatctactctccttactaca-aatctacaagccttctctttacatgcccaaaccacctaagcctag 16917218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 639
Target Start/End: Complemental strand, 29520758 - 29520707
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctac 639  Q
    ||||| |||||||||||||||||||| || |||||||| | |||||||||||    
T  29520758 cctccatctgatctactctccttactacaaaatctacaagtcttctctctac 29520707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Complemental strand, 30559801 - 30559732
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||| ||| |||||||| || |||||||||| ||||||||||  |  ||||||||||||||    
T  30559801 cctccatctgatccactgtccttactacaaaatctacatgtcttctctctaaatgcccaaaccacctaag 30559732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 30812859 - 30812960
Alignment:
Q  460 atgaattaaacgacattatagtgtttt-tcaaaaaccatatctttttcaaactcgattatttctagattctt-ctaatactttcttttataatttttcta 557  Q
    |||||| ||||||||  |||||||| | ||||||||||| |||||||| |||||  |||| ||||||| ||| |||| | |||||| |||| ||||||||    
T  30812859 atgaatcaaacgacaccatagtgttctatcaaaaaccatgtctttttccaactcatttatctctagatccttcctaacagtttcttgtatagtttttcta 30812958  T
Q  558 gg 559  Q
    ||    
T  30812959 gg 30812960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 656
Target Start/End: Original strand, 41971959 - 41972020
Alignment:
Q  595 ctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaa 656  Q
    |||||||||||||||| ||  | |||||||| | ||||||||||| | ||||||||||||||    
T  41971959 ctgatctactctccttgctagaaaatctacacgtcttctctctacatgtccaaaccacctaa 41972020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 568 - 704
Target Start/End: Original strand, 48736053 - 48736192
Alignment:
Q  568 tacctctaatgatctgactccctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctagctagt 667  Q
    |||||||| |||||||||||||||| | |||||||||||||| ||| ||||||| ||| | |||| |||||| |   |||||||||||||||||| |  |    
T  48736053 tacctctagtgatctgactccctccatttgatctactctcctaactacataatccacaggtcttcgctctacatgagcaaaccacctaagtctagtttct 48736152  T
Q  668 c---tcttttctactgtagttgttaccccaactctttcta 704  Q
    |   ||||||||||||||| || |||||||||||| ||||    
T  48736153 cccatcttttctactgtaggtgctaccccaactctctcta 48736192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 598 - 657
Target Start/End: Complemental strand, 42187568 - 42187509
Alignment:
Q  598 atctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    |||||||||||||||| ||||||||||| ||||||||| ||| |  ||||||||||||||    
T  42187568 atctactctccttactacataatctacaggccttctctttacatgcccaaaccacctaag 42187509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 657
Target Start/End: Original strand, 38135330 - 38135455
Alignment:
Q  532 taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgcct 630  Q
    ||||| ||||| ||||| |||||||||| ||   | | |||||||||||||||||  ||||| ||||||||| |||||||||| || |||||||  | ||    
T  38135330 taatagtttctcttatactttttctaggtcttcatctgcctctaatgatctgactatcctccatctgatcta-tctccttactacaaaatctactggtct 38135428  T
Q  631 tctctctacttatccaaaccacctaag 657  Q
    ||| ||||| | |||||||||||||||    
T  38135429 tctgtctacatgtccaaaccacctaag 38135455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 615
Target Start/End: Complemental strand, 28359423 - 28359338
Alignment:
Q  532 taatactttcttttataatttttctaggcctatttgtacctctaa-tgatctgact-ccctccgtctgatctactctccttactgc 615  Q
    ||||| ||||| |||||||||||||||| || | | ||||||||| |||| ||||| |||||| |||||| |||||||||||||||    
T  28359423 taatattttctcttataatttttctaggactttctctacctctaagtgatttgactaccctccatctgatatactctccttactgc 28359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 662
Target Start/End: Original strand, 6420670 - 6420738
Alignment:
Q  594 tctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||||||||||||||||||| ||  ||||||| | ||||||||||| |  |||||||||||||| ||||    
T  6420670 tctgatctactctccttactacagtatctacaagtcttctctctacatgcccaaaccacctaagcctag 6420738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 657
Target Start/End: Original strand, 28628049 - 28628176
Alignment:
Q  531 ctaatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgcc 629  Q
    |||||| ||||| ||||| |||||||||| ||   | |||||||  |||| |||||  ||||| || ||||||||||||||||| ||||||||||| |      
T  28628049 ctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatctactctccttactacataatctacaggtt 28628148  T
Q  630 ttctctctacttatccaaaccacctaag 657  Q
    |||||| ||| |  ||||||||||||||    
T  28628149 ttctctttacatgcccaaaccacctaag 28628176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 48202884 - 48202950
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||||||||||||||||| || |||||||| | ||||||||||| |   ||||||||||||| ||||    
T  48202884 tgatctactctccttactacagaatctacaagtcttctctctacatgcgcaaaccacctaagcctag 48202950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 658
Target Start/End: Original strand, 18605245 - 18605390
Alignment:
Q  515 ttatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttac 612  Q
    ||||||||| || |||| ||||| ||||| || || |||||||||| |||    ||| |||| |||| |||||| ||||  ||||||||| |||||| ||    
T  18605245 ttatttctaaatccttcataatagtttctcttgtagtttttctaggtctacccatacatctagtgatttgactctcctcgatctgatctaatctcctaac 18605344  T
Q  613 tgcataatctacatgccttctctctacttatccaaaccacctaagt 658  Q
    |  |||||||||||| ||||||||||| |   ||||||||||||||    
T  18605345 tatataatctacatgtcttctctctacatgctcaaaccacctaagt 18605390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 658
Target Start/End: Complemental strand, 18637745 - 18637600
Alignment:
Q  515 ttatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttac 612  Q
    ||||||||| || |||| ||||| ||||| || || |||||||||| |||    ||| |||| |||| |||||| ||||  ||||||||| |||||| ||    
T  18637745 ttatttctaaatccttcataatagtttctcttgtattttttctaggtctacccatacatctagtgatttgactctcctcgatctgatctaatctcctaac 18637646  T
Q  613 tgcataatctacatgccttctctctacttatccaaaccacctaagt 658  Q
    |  |||||||||||| ||||||||||| |   ||||||||||||||    
T  18637645 tatataatctacatgtcttctctctacatgctcaaaccacctaagt 18637600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 658
Target Start/End: Complemental strand, 18651179 - 18651034
Alignment:
Q  515 ttatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttac 612  Q
    ||||||||| || |||| ||||| ||||| || || |||||||||| |||    ||| |||| |||| |||||| ||||  ||||||||| |||||| ||    
T  18651179 ttatttctaaatccttcataatagtttctcttgtattttttctaggtctacccatacatctagtgatttgactctcctcgatctgatctaatctcctaac 18651080  T
Q  613 tgcataatctacatgccttctctctacttatccaaaccacctaagt 658  Q
    |  |||||||||||| ||||||||||| |   ||||||||||||||    
T  18651079 tatataatctacatgtcttctctctacatgctcaaaccacctaagt 18651034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Original strand, 25579251 - 25579320
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||| ||||||||| |||||  || |||||||||| ||||||||||| |  ||||||||||||||    
T  25579251 cctccatctaatctactcttcttaccacagaatctacatgtcttctctctacatccccaaaccacctaag 25579320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Complemental strand, 39812065 - 39811996
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||||||||||||||||  | |||||||||  ||||||||||| |  |||||| |||||||    
T  39812065 cctccatctgatctactctccttactatagaatctacatctcttctctctacatgcccaaactacctaag 39811996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 596 - 662
Target Start/End: Complemental strand, 21200648 - 21200582
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |  |||||||||||||||||||    
T  21200648 tgatctactctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctag 21200582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 662
Target Start/End: Complemental strand, 11581609 - 11581478
Alignment:
Q  532 taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgcct 630  Q
    ||||| ||||| ||||| |||||||||| ||  |  |||||||| |||| |||||| ||| | |||||| |||||| |||||| ||||||  ||||| ||    
T  11581609 taatagtttctcttatagtttttctaggtcttctcatacctctagtgatttgactcacctacatctgatgtactcttcttactacataattcacatgtct 11581510  T
Q  631 tctctctacttatccaaaccacctaagtctag 662  Q
    ||||||||| || |||||||||||||||||||    
T  11581509 tctctctacatacccaaaccacctaagtctag 11581478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 639
Target Start/End: Original strand, 42026710 - 42026761
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctac 639  Q
    ||||||||||||||||||||||||||  |||||||||| |  ||||||||||    
T  42026710 cctccgtctgatctactctccttactaaataatctacaagttttctctctac 42026761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 34719251 - 34719296
Alignment:
Q  593 gtctgatctactctccttactgcataatctacatgccttctctcta 638  Q
    ||||||||||||||||||||| || |||| ||| ||||||||||||    
T  34719251 gtctgatctactctccttactacaaaatcaacaggccttctctcta 34719296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Original strand, 45289265 - 45289334
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||||||||| |||||| || |||||||| |  |||||||||| |  ||||||||||||||    
T  45289265 cctccatctgatctactcttcttactacaaaatctacaagtgttctctctacgtgcccaaaccacctaag 45289334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Complemental strand, 54128486 - 54128417
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||||||||| | |||||||| ||||||| | ||| ||||||| |  ||||||||||||||    
T  54128486 cctccatctgatctactctacgtactgcatcatctacaggtcttttctctacatgcccaaaccacctaag 54128417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 1525855 - 1525678
Alignment:
Q  487 tcaaaaaccatatctttttcaaactcgattatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgac 585  Q
    ||||||||||| ||||| || |||||  |||| ||| ||| |||| ||||| ||||| || || |||||||||| |||    |||||||| |||||||||    
T  1525855 tcaaaaaccatgtctttctccaactcatttatctctggatccttcctaatagtttctcttgtagtttttctaggtctacccctacctctagtgatctgac 1525756  T
Q  586 tc-cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    || ||||| |||||||||||||||| |||||| |||  ||  | ||||||||||| | ||||| ||||||||||||||    
T  1525755 tctcctccatctgatctactctcctaactgcagaattcacgggtcttctctctacatgtccaagccacctaagtctag 1525678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 596 - 662
Target Start/End: Complemental strand, 42199386 - 42199320
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||||||||||||||||| || |||||||||| ||||||||||| |  |||||||||||||||||||    
T  42199386 tgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctag 42199320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 568 - 662
Target Start/End: Complemental strand, 21952486 - 21952391
Alignment:
Q  568 tacctctaatgatctgactccc-tccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||||||| |||| |||||||| ||| ||||||||| ||||||||||  | |||| ||| | ||||||||||| | |||||||||||| |||||||    
T  21952486 tacctctagtgatttgactcccctccatctgatctattctccttactatagaatccacaggacttctctctacatgtccaaaccacctgagtctag 21952391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 657
Target Start/End: Complemental strand, 11675610 - 11675549
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    |||||||||||||||||| || |||||||| |||||||||| || |  ||||||||||||||    
T  11675610 tgatctactctccttactacagaatctacaggccttctctcaacatgcccaaaccacctaag 11675549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 639
Target Start/End: Complemental strand, 14667873 - 14667828
Alignment:
Q  594 tctgatctactctccttactgcataatctacatgccttctctctac 639  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||    
T  14667873 tctgatctactctccttactacataatgtacatgtcttctctctac 14667828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 14749518 - 14749341
Alignment:
Q  487 tcaaaaaccatatctttttcaaactcgattatttctagattcttcta-atactttcttttataatttttctaggcctatttgtacctctaatgatctgac 585  Q
    ||||||||||||| | | || |||||| | || ||||||| |||||  ||| ||||| ||||| |||||||||| ||   | | ||| || |||| ||||    
T  14749518 tcaaaaaccatatttctatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttcctctgcctttagtgatttgac 14749419  T
Q  586 tccc-tccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||| ||| ||||||| |||||||||||  || |||| ||| | ||||||||||| | ||||||||| ||||||||||    
T  14749418 tcccctccatctgatcgactctccttacaacagaatccacaggtcttctctctacatgtccaaaccatctaagtctag 14749341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 662
Target Start/End: Complemental strand, 2713070 - 2712978
Alignment:
Q  571 ctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||| |||| |||||| ||||| |||||||||||||||||  | || |||| ||| | ||||||||||| |  |||||||||||||||||||    
T  2713070 ctctagtgatttgactctcctccatctgatctactctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctag 2712978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 656
Target Start/End: Original strand, 7359434 - 7359501
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaa 656  Q
    ||||| |||||||||||||||||||| || |||||||||  ||||||||||| |  |||||||||||||    
T  7359434 cctccatctgatctactctccttactacagaatctacatatcttctctctacat-gccaaaccacctaa 7359501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 639
Target Start/End: Original strand, 18351080 - 18351132
Alignment:
Q  587 ccctccgtctgatctactctccttactgcataatctacatgccttctctctac 639  Q
    |||||| | |||||||||||||||| ||||||||||||| | |||||||||||    
T  18351080 ccctccttttgatctactctccttattgcataatctacaggtcttctctctac 18351132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 662
Target Start/End: Complemental strand, 43475348 - 43475274
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||| |||||||||||||||||||| ||  ||||||| | |||||||||   || |||||||||||||| ||||    
T  43475348 cctccatctgatctactctccttactacaacatctacaggtcttctctctgaatacccaaaccacctaagcctag 43475274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Original strand, 41109914 - 41109983
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| || |||||||| |||||||| || |||||| | ||||||||||||| | | |||||||||||||    
T  41109914 cctccatccgatctactatccttactacaaaatctataggccttctctctacatgttcaaaccacctaag 41109983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 657
Target Start/End: Complemental strand, 28497597 - 28497528
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| |||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||||||||    
T  28497597 cctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaag 28497528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 46372235 - 46372058
Alignment:
Q  487 tcaaaaaccatatctttttcaaactcgattatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgac 585  Q
    ||||||||||| ||||| || |||||  |||| ||||||| |||| ||||| ||||| ||||| |||||||||| |||    |||||||| ||||||| |    
T  46372235 tcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatctggc 46372136  T
Q  586 tccc-tccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||| ||  |||||||| |||| |||| | || |||| ||||| ||||||||||| |   ||||||||||||||||||    
T  46372135 tcccctctatctgatctgctcttcttagtacagaatccacatgtcttctctctacatgcacaaaccacctaagtctag 46372058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 568 - 698
Target Start/End: Complemental strand, 17900609 - 17900475
Alignment:
Q  568 tacctctaatgatctgactcc-ctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag---c 663  Q
    ||||||||||||||||||||| |||| ||||||||||||||||  || ||||||| ||| | ||||||||||| |  ||||||||| | |||||||   |    
T  17900609 tacctctaatgatctgactcctctccatctgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttc 17900510  T
Q  664 tagtctcttttctactgtagttgttaccccaactc 698  Q
    ||   ||||||||||| ||| || |||||||||||    
T  17900509 taccgtcttttctactataggtgctaccccaactc 17900475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 662
Target Start/End: Original strand, 31961309 - 31961514
Alignment:
Q  460 atgaattaaacgacattatagtgtttt-tcaaaaaccatatctttttcaaactcgattatttctagattcttc-taatactttcttttataatttttcta 557  Q
    |||||| ||||||| | |||||||| | |||| |||||| ||||| || |||||  |||| |||||||  ||| ||||| ||||| ||||| ||||||||    
T  31961309 atgaatcaaacgacgtcatagtgttctatcaacaaccatgtctttctccaactcatttatctctagatctttcctaatagtttctcttatagtttttcta 31961408  T
Q  558 ggcctatttgtacctctaatgatctgactcc-ctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaa 656  Q
    || |||    |||||||| |||| ||||||| |||| ||| ||| |||||||| ||| || |||| ||| | ||||||||||| |  |||||||||| ||    
T  31961409 ggtctacccctacctctagtgatttgactcctctccatctaatccactctcctaactacagaatccacaagtcttctctctacatgcccaaaccacccaa 31961508  T
Q  657 gtctag 662  Q
    ||||||    
T  31961509 gtctag 31961514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 588 - 659
Target Start/End: Original strand, 34233198 - 34233269
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtc 659  Q
    ||||| ||| |||||||||||||||| |||||||||||||   ||||||||| | ||||||||||| |||||    
T  34233198 cctccatctcatctactctccttactacataatctacatgttctctctctacatgtccaaaccacccaagtc 34233269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 662
Target Start/End: Complemental strand, 54470307 - 54470241
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||| ||||||||||||| |||||| |||||| ||||||||||| |  ||||||||| |||||||||    
T  54470307 tgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctag 54470241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 662
Target Start/End: Original strand, 31897499 - 31897676
Alignment:
Q  487 tcaaaaaccatatctttttcaaactcgattatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgac 585  Q
    |||| |||||| ||||| || |||||  |||| ||||||| |||| ||||| ||||| ||||| |||||||||| |||    |||||||| |||||||||    
T  31897499 tcaacaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatctgac 31897598  T
Q  586 t-ccctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    | |||||| ||| ||| |||||||| ||| || |||| ||| | || |||||||| |   ||||||||| ||||||||    
T  31897599 tcccctccatctaatcgactctcctaactacagaatccacaggtctgctctctacatgcgcaaaccacccaagtctag 31897676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 638
Target Start/End: Complemental strand, 28351724 - 28351617
Alignment:
Q  532 taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgcct 630  Q
    ||||| ||||| ||||| |||||||||| || | | |||||||  | ||||||||  ||||| |||||||||||||||||||| || | |||||| | ||    
T  28351724 taatagtttctcttatagtttttctaggtctttctctacctcttgtaatctgactatcctccatctgatctactctccttactacagagtctacaggtct 28351625  T
Q  631 tctctcta 638  Q
    ||||||||    
T  28351624 tctctcta 28351617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 662
Target Start/End: Original strand, 51550401 - 51550496
Alignment:
Q  568 tacctctaatgatctgactccc-tccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||| || ||||||||||||| ||| ||||||| ||||||||| ||  | |||| ||||  ||||||||||| |  |||||||||||||||||||    
T  51550401 tacctttagtgatctgactcccctccatctgatcaactctccttgctagagaatccacatatcttctctctacatgcccaaaccacctaagtctag 51550496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 598 - 656
Target Start/End: Original strand, 17666227 - 17666285
Alignment:
Q  598 atctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaa 656  Q
    ||||||||| |||||| |||||||||||||  ||| |||||| | ||||||||||||||    
T  17666227 atctactcttcttactacataatctacatgttttccctctacatgtccaaaccacctaa 17666285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 661
Target Start/End: Complemental strand, 26356748 - 26356654
Alignment:
Q  568 tacctctaatgatctgactccc-tccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtcta 661  Q
    |||||||| |||| |||||||| ||| || ||||||||||||||||| ||  | | ||||| ||||||||||  |  ||||||||||||||||||    
T  26356748 tacctctagtgatttgactcccctccatccgatctactctccttactacaatacccacatgtcttctctctaagtgcccaaaccacctaagtcta 26356654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 46715554 - 46715620
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||||||||||||| || ||||||| ||||| ||||||||||| |  ||| |||||||||| ||||    
T  46715554 tgatctactctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctag 46715620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 657
Target Start/End: Complemental strand, 31339636 - 31339575
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||||||| |||||||| ||||||||||| | ||||||||||| |   |||||||||||||    
T  31339636 tgatctactatccttactacataatctacaagtcttctctctacatgctcaaaccacctaag 31339575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 40419850 - 40419673
Alignment:
Q  487 tcaaaaaccatatctttttcaaactcgattatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgac 585  Q
    ||||||||||| ||||| || |||||  |||| ||||||| |||| ||||| |||||| ||||  ||||||| | |||    |||||||| | |||| ||    
T  40419850 tcaaaaaccatgtctttctccaactcatttatctctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaac 40419751  T
Q  586 tccc-tccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||| ||| ||||| ||||||||||| || ||||||| ||||| ||||||||||| |  ||||||||| |||||||||    
T  40419750 tcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaaccacttaagtctag 40419673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 660
Target Start/End: Complemental strand, 2544707 - 2544635
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtct 660  Q
    ||||| ||||||||||||||||||||  | |||||| | | ||||||||||| | ||||||||||||||||||    
T  2544707 cctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtct 2544635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 657
Target Start/End: Original strand, 32404711 - 32404769
Alignment:
Q  599 tctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    |||||||||||||||  | |||||||| | ||||||||||| |||||||||||||||||    
T  32404711 tctactctccttactatagaatctacaggtcttctctctacatatccaaaccacctaag 32404769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 657
Target Start/End: Complemental strand, 5338884 - 5338763
Alignment:
Q  537 ctttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgccttctct 635  Q
    |||||| ||||| |||||||||| ||| || | |||||| |||||||| |  ||||| ||||||||||||||||||||  |  ||||||| | |||||||    
T  5338884 ctttctcttatagtttttctaggtctacttctgcctctagtgatctgaatatcctccatctgatctactctccttactaaagcatctacaggtcttctct 5338785  T
Q  636 ctacttatccaaaccacctaag 657  Q
    || | |  ||||||||||||||    
T  5338784 ctgcatgcccaaaccacctaag 5338763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 699
Target Start/End: Original strand, 39422216 - 39422330
Alignment:
Q  587 ccctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag---ctagtctcttttctactgtag 683  Q
    |||||| | ||||||| |||||| ||| ||||||||||||| ||||||||||| | ||| || |||||||||||||   ||| | ||||||||||| ||     
T  39422216 ccctccatatgatctattctcctaactacataatctacatgtcttctctctacatgtcc-aagcacctaagtctagtttctactatcttttctactatat 39422314  T
Q  684 ttgttaccccaactct 699  Q
     |||||| ||||||||    
T  39422315 gtgttactccaactct 39422330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 699
Target Start/End: Complemental strand, 43423816 - 43423713
Alignment:
Q  599 tctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag---ctagtctcttttctactgtagttgttaccccaa 695  Q
    |||||||| |||||| ||||||||||| | ||||||||||| |  |||||||||||||| ||||   | |   ||||||||||| ||| |||||||||||    
T  43423816 tctactctacttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaa 43423717  T
Q  696 ctct 699  Q
    ||||    
T  43423716 ctct 43423713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 662
Target Start/End: Complemental strand, 26016603 - 26016471
Alignment:
Q  531 ctaatactttcttttataatttttctaggcctatttgtacctctaatgatctgact-ccctccgtctgatctactctccttactgcataatctacatgcc 629  Q
    |||||| ||||| ||||| |||||||||| ||| |  |||||||| |||||||||| |||| | ||||||||| ||||||| || || |||  | | | |    
T  26016603 ctaatagtttctcttatagtttttctaggtctactcttacctctagtgatctgactccccttcatctgatctaatctccttgctacagaatgcataggtc 26016504  T
Q  630 ttctctctacttatccaaaccacctaagtctag 662  Q
    |||| ||||| || ||||||||||||| |||||    
T  26016503 ttctttctacatacccaaaccacctaaatctag 26016471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 654
Target Start/End: Original strand, 13827752 - 13827810
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacct 654  Q
    |||||||||||||||||| || ||||||||   ||||||||||| | ||||||||||||    
T  13827752 tgatctactctccttactacagaatctacacttcttctctctacatgtccaaaccacct 13827810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 657
Target Start/End: Original strand, 48431580 - 48431649
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||| |||||| ||||| || |||||||| | ||||||||||| |  ||||||||||||||    
T  48431580 cctccatctgatcaactctctttactacaaaatctacaagtcttctctctacatgcccaaaccacctaag 48431649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 531 - 657
Target Start/End: Original strand, 9593824 - 9593949
Alignment:
Q  531 ctaatactttcttttataatttttctaggcctatttgtacctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgcc 629  Q
    |||||| ||||| |||||||||||||||| ||   | |||||||  |||| |||||| ||||| ||||||||||||| |||||| ||  ||||||||| |    
T  9593824 ctaatagtttctcttataatttttctaggtcttcctctacctct--tgatttgactctcctccatctgatctactcttcttactacagcatctacatgtc 9593921  T
Q  630 ttctctctacttatccaaaccacctaag 657  Q
    |||||||||| |  ||||||||||||||    
T  9593922 ttctctctacatgcccaaaccacctaag 9593949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 662
Target Start/End: Original strand, 6907007 - 6907075
Alignment:
Q  594 tctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    |||||||||||||||||||| || |||||||||| ||||||||||| || |||||| || |||| ||||    
T  6907007 tctgatctactctccttactacaaaatctacatgtcttctctctacataaccaaactacgtaagcctag 6907075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 658
Target Start/End: Original strand, 14389324 - 14389412
Alignment:
Q  571 ctctaatgatctgactc-cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagt 658  Q
    ||||| ||||||||||  ||||| ||||||||| |||||||||| || | |||| | | ||||||||||| | ||||||||||||||||    
T  14389324 ctctagtgatctgactatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagt 14389412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 657
Target Start/End: Complemental strand, 24665913 - 24665849
Alignment:
Q  594 tctgatctactctccttactgcataa-tctacatgccttctctctacttatccaaaccacctaag 657  Q
    |||||||||||||||||||| || || |||||| | ||||||||||| | |||||||||||||||    
T  24665913 tctgatctactctccttactacaaaaatctacaggtcttctctctacatgtccaaaccacctaag 24665849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 657
Target Start/End: Original strand, 32913389 - 32913505
Alignment:
Q  542 ttttataatttttctaggcctatttgtacctctaatgatctgact-ccctccgtctgatctactctccttactgcataatctacatgccttctctctact 640  Q
    ||||||| ||||||||| ||| | | |||||||| |||| ||||| |||||| ||| || |||||||||| || |||||||||||   ||| |||||||     
T  32913389 ttttatagtttttctagacctttctctacctctagtgatttgactaccctccatctaatatactctccttgctacataatctacaactcttttctctaca 32913488  T
Q  641 tatccaaaccacctaag 657  Q
    |  ||||||||||||||    
T  32913489 tggccaaaccacctaag 32913505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 661
Target Start/End: Original strand, 34676 - 34743
Alignment:
Q  594 tctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtcta 661  Q
    |||||||||||||| ||||| |||||||| || || |||||||||| |  |||| |||||||||||||    
T  34676 tctgatctactctcgttactacataatctccaagctttctctctacatgcccaacccacctaagtcta 34743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 639
Target Start/End: Complemental strand, 579526 - 579475
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctac 639  Q
    ||||| ||||||| ||||||||||||  |||||||||| |||||||||||||    
T  579526 cctccatctgatcaactctccttactatataatctacaagccttctctctac 579475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 656
Target Start/End: Original strand, 9749379 - 9749466
Alignment:
Q  570 cctctaatgatctgact-ccctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaa 656  Q
    ||||||||||| ||||| ||||| || ||||||||||| ||||||  | |||||||||| ||||||||||| |  | |||||||||||    
T  9749379 cctctaatgatttgactaccctctgtttgatctactcttcttactataaaatctacatgacttctctctacatccctaaaccacctaa 9749466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 515 - 658
Target Start/End: Complemental strand, 42543418 - 42543273
Alignment:
Q  515 ttatttctagattcttc-taatactttcttttataatttttctaggcctatttgtacctctaatgatctgactccc-tccgtctgatctactctccttac 612  Q
    |||| ||||||| |||| ||||| ||||| ||||| |||||||||| |||    |||||||| ||||||||||||| ||| | |||||||||||||| ||    
T  42543418 ttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatctgactcccctccatttgatctactctcctaac 42543319  T
Q  613 tgcataatctacatgccttctctctacttatccaaaccacctaagt 658  Q
    | || |||| ||| | ||||||| ||| |  |||||||||||||||    
T  42543318 tacagaatccacaggtcttctctgtacatgcccaaaccacctaagt 42543273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 662
Target Start/End: Original strand, 13240927 - 13240993
Alignment:
Q  596 tgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    ||||||||||||||||||  | |||||||||| ||||||||||| |  |||||||||||||| ||||    
T  13240927 tgatctactctccttactaaagaatctacatgtcttctctctacatgcccaaaccacctaagcctag 13240993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 657
Target Start/End: Complemental strand, 3481249 - 3481180
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||||||||||||| || || |||||| | | ||||||||||| | |||||||||||||||    
T  3481249 cctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaag 3481180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 657
Target Start/End: Original strand, 43752121 - 43752190
Alignment:
Q  588 cctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||| ||||||||||||||| |||| ||||||||| | | ||||||||||| | |||||| ||||||||    
T  43752121 cctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaag 43752190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 639
Target Start/End: Complemental strand, 42092626 - 42092574
Alignment:
Q  587 ccctccgtctgatctactctccttactgcataatctacatgccttctctctac 639  Q
    |||||| ||| |||||||||||||||| || |||||||| |||||||||||||    
T  42092626 ccctccatctaatctactctccttactacaaaatctacaagccttctctctac 42092574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 657
Target Start/End: Complemental strand, 6219060 - 6219006
Alignment:
Q  603 ctctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    ||||||||||| ||||||||||||  || |||||||| | |||||||||||||||    
T  6219060 ctctccttactacataatctacatatctcctctctacatgtccaaaccacctaag 6219006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 662
Target Start/End: Original strand, 44437792 - 44437969
Alignment:
Q  487 tcaaaaaccatatctttttcaaactcgattatttctagattcttct-aatactttcttttataatttttctaggcctatttgtacctctaatgatctgac 585  Q
    ||||||||||| | ||| || |||||  |||| ||||||| ||||| |||| |||||  |||| |||||||||| |||    |||||||| |||||||||    
T  44437792 tcaaaaaccatgtttttctccaactcatttatctctagatccttcttaatagtttctcatatagtttttctaggtctacccctacctctagtgatctgac 44437891  T
Q  586 t-ccctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaagtctag 662  Q
    | |||||| ||| |||||  ||||||| | || |||| ||| | ||||||||||| |  | |||||||||| ||||||    
T  44437892 tcccctccatctcatctatactccttattacagaatccacaagtcttctctctacatgccgaaaccacctatgtctag 44437969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 657
Target Start/End: Original strand, 346946 - 347016
Alignment:
Q  587 ccctccgtctgatctactctccttactgcataatctacatgccttctctctacttatccaaaccacctaag 657  Q
    |||||| ||||||| |||||||||||| || |||||| | |  |||||||||| || ||||||||||||||    
T  346946 ccctccatctgatcaactctccttactacagaatctataggttttctctctacatacccaaaccacctaag 347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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