View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543-Insertion-4 (Length: 533)
Name: NF5543-Insertion-4
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 103 - 533
Target Start/End: Original strand, 51854645 - 51855080
Alignment:
| Q |
103 |
atgtcaaatcttaaatcttatgaaaacaaaaggttgttgaaataaaactacataatcaatatgaaatcagaacattcaaactgttttgacatgaagattc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51854645 |
atgtcaaatcttaaatcttatgaaaacaaaaggttgttgaaataaaactacataatcaatatgaaatcaaaacattcaaactgttttgacatgaagattc |
51854744 |
T |
|
| Q |
203 |
aaaggttgttgctcgactgtcaaagcatatcacccatattcaatttctttcgctttgacaaaatgttgcagagtattgctccttcatattggtctagcaa |
302 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51854745 |
aaaggttgttgatcgactgtcaaagcatatcacccatattcaatttctttcgctttgacaaaatgttgcagagtattgctccttcatattggtctagaaa |
51854844 |
T |
|
| Q |
303 |
tagtacttgagcttatccaactatgaaactgaattaggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51854845 |
tagtacttgagcttatccaactatgaaactgaattaggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttggc |
51854944 |
T |
|
| Q |
403 |
catcaccaccaatttgatt---aacagcaacaaaagctagtgta--gtagtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaa |
497 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
51854945 |
catcaccaccaatttgattaacaacagcaacaaaagctagtgtagggtagtgtctattgaagtagcatgtgccatgaccattagtttttcattttttcaa |
51855044 |
T |
|
| Q |
498 |
ccagctagtgttgatataaatttagctacattttgc |
533 |
Q |
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| T |
51855045 |
ccagctagtgttgatataaacttagctacattttgc |
51855080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 51848354 - 51848446
Alignment:
| Q |
8 |
cttataacttacatgaaaacaattgacttgattttcaattttgttaaaaatgacttataaaattgtgcactattcaggatcataacacgaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||| |||||| |
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| T |
51848354 |
cttataacttacatgaaaacaattgacttgattttcaattttgttagaaatgacttataaaattgtgcaccatttatgatcataacgcgaccg |
51848446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 136 - 533
Target Start/End: Original strand, 8943913 - 8944315
Alignment:
| Q |
136 |
ttgttgaaataaaactacataatcaatatgaaatcagaacattcaaactgttttgacatgaagattcaaaggttgttgctcgactgtcaaagcatatcac |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8943913 |
ttgttgaaataaaactacataatcaatatgaaatcaaaacattcatattgttttgacatgaagattcaaaggttgtttatcgactgtcaaagcatatcac |
8944012 |
T |
|
| Q |
236 |
ccatattcaatttctttcgctttgacaaaatgttgcagagtattgctccttcatattggtctagcaatagtacttgagcttatccaactatgaaactgaa |
335 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8944013 |
ccatattcaatttctttcgctttgactaaatgttgcagagtattgctccttcatattgatctagcaatagtacttgagattatccaactatgaaactgaa |
8944112 |
T |
|
| Q |
336 |
ttaggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgatt---aacagcaacaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8944113 |
ttaggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattaacaacagcaacaa |
8944212 |
T |
|
| Q |
433 |
aagctagtgta--gtagtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaaccagctagtgttgatataaatttagctacattt |
530 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8944213 |
aagctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattt |
8944312 |
T |
|
| Q |
531 |
tgc |
533 |
Q |
| |
|
||| |
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|
| T |
8944313 |
tgc |
8944315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 8943873 - 8943917
Alignment:
| Q |
8 |
cttataacttacatgaaaacaattgacttgattttcaattttgtt |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8943873 |
cttataacttacatgaaaacaattgacttgattttcaattttgtt |
8943917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 218 - 533
Target Start/End: Complemental strand, 26887664 - 26887344
Alignment:
| Q |
218 |
actgtcaaagcatatcacccatattcaatttctttcgctttgacaaaatgttgcagagtattgctccttcatattggtctagcaatagtacttgagctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887664 |
actgtcaaagcatatcacccatattcaatttctttcgctttgacaaaatgttgcagagtattgctccttcatattggtctagcaatagtacttgagctta |
26887565 |
T |
|
| Q |
318 |
tccaactatgaaactgaattaggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaattt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887564 |
tccaactatgaaactgaattaggcatttagttcttgaaggttttttaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaattt |
26887465 |
T |
|
| Q |
418 |
gatt---aacagcaacaaaagctagtgta--gtagtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaaccagctagtgttgat |
512 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887464 |
gattaacaacagcaacaaaagctagtgtagtgtagtgtctattgaagtagcatgcgccatgaccattagtttttcattgtttcaaccagctagtgttgat |
26887365 |
T |
|
| Q |
513 |
ataaatttagctacattttgc |
533 |
Q |
| |
|
||||| ||||||||||||||| |
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| T |
26887364 |
ataaacttagctacattttgc |
26887344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 26887925 - 26887732
Alignment:
| Q |
8 |
cttataacttacatgaaaacaattgacttgattttcaattttgttaaaaatgacttataaaattgtgcactattcaggatcataacacgaccgcgatgtc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||| || ||| |||||| |
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|
| T |
26887925 |
cttataacttacatgaaaacaattgacttgattttcacttttgttagaaataacatataaaattgtgcactattcaggatcataacgcggccgtgatgtc |
26887826 |
T |
|
| Q |
108 |
aaatcttaaatcttatgaaaacaaaaggttgttgaaataaaactacataatcaatatgaaatcagaacattcaaactgttttgacatgaagatt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26887825 |
aaatcttaaatcttatgaaaacaaaaggttgttgaaataaacctacataatcaatatgaaatcaaaacattcaaactgttttgacatgaagatt |
26887732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 26887710 - 26887667
Alignment:
| Q |
218 |
actgtcaaagcatatcacccatattcaatttctttcgctttgaca |
262 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
26887710 |
actgtcaaagcatatcatccatattcaa-ttctttcgctttgaca |
26887667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 13578282 - 13578125
Alignment:
| Q |
8 |
cttataacttacatgaaaacaattgacttgattttcaattttgttaaaaatgacttataaaattgtgcactattcaggatcataacacgaccgcgatgtc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| || |
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| T |
13578282 |
cttataacttacatgaaaacaattgacttgattttcaattttgttagaaatgacttataaaattgtgcactattcaggatcataacgcgaccgtgatatc |
13578183 |
T |
|
| Q |
108 |
aaatcttaaatcttatgaaaacaaaaggttgttgaaataaaactacataatcaatatg |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13578182 |
aaatcttaaatcttatgaaaacaaaaggttgttgaaataaaactagataatcaatatg |
13578125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 4581568 - 4581517
Alignment:
| Q |
65 |
taaaattgtgc-actattcaggatcataacacgaccgcgatgtcaaatctta |
115 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
4581568 |
taaaattgtgctattattgaggatcataacacgaccgcgatttcaaatctta |
4581517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 313 - 530
Target Start/End: Original strand, 21988833 - 21989053
Alignment:
| Q |
313 |
gcttatccaactatgaaactgaattaggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccacc |
412 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||| || | |||||||||||||||| |||||||||||| | |||||| |||||||||||||||| |
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|
| T |
21988833 |
gcttttccaactataaaattgaattaggcatttagctctcgatggttttctaactatgaaattaaaattgaattaggcaaatggcttagccatcaccacc |
21988932 |
T |
|
| Q |
413 |
aatttgatt---aacagcaacaaaagctagtgtagtagtgtctattgaagtagcatgtgacatgaccattagtttttcattgtttcaaccagctagtgtt |
509 |
Q |
| |
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| ||||||| ||||||||| |||| |||||| |||||||| ||||||||||| || ||| ||||| |||||||| | ||||| ||||||||||| | |
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|
| T |
21988933 |
agtttgattaacaacagcaactaaagttagtgtcgtagtgtccgctgaagtagcatatgccataaccatcagtttttcttagtttccaccagctagtgct |
21989032 |
T |
|
| Q |
510 |
gatataaatttagctacattt |
530 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
21989033 |
gatataaacttagctacattt |
21989053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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