View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5543-Insertion-5 (Length: 685)

Name: NF5543-Insertion-5
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5543-Insertion-5
NF5543-Insertion-5
[»] chr5 (13 HSPs)
chr5 (8-685)||(37901971-37902651)
chr5 (397-493)||(34383505-34383601)
chr5 (254-376)||(14662240-14662362)
chr5 (150-236)||(34383738-34383826)
chr5 (150-226)||(35205123-35205199)
chr5 (150-226)||(35211960-35212036)
chr5 (147-260)||(34769585-34769697)
chr5 (150-191)||(4924779-4924820)
chr5 (165-210)||(35205071-35205116)
chr5 (165-210)||(35212043-35212088)
chr5 (150-225)||(10523804-10523879)
chr5 (151-236)||(14947657-14947742)
chr5 (148-225)||(39060167-39060244)
[»] chr8 (7 HSPs)
chr8 (397-489)||(11425752-11425844)
chr8 (152-257)||(11425461-11425565)
chr8 (150-259)||(37479210-37479317)
chr8 (151-257)||(40278984-40279089)
chr8 (150-236)||(18227039-18227125)
chr8 (253-326)||(4165474-4165547)
chr8 (331-396)||(4165565-4165631)
[»] scaffold0015 (1 HSPs)
scaffold0015 (147-257)||(56607-56716)
[»] chr4 (11 HSPs)
chr4 (397-489)||(5415443-5415535)
chr4 (150-236)||(5415149-5415235)
chr4 (150-257)||(23559987-23560093)
chr4 (147-258)||(52327027-52327137)
chr4 (148-260)||(41377398-41377509)
chr4 (148-236)||(46382056-46382144)
chr4 (147-253)||(55875966-55876071)
chr4 (150-218)||(779867-779935)
chr4 (150-236)||(48262962-48263051)
chr4 (150-260)||(55875858-55875967)
chr4 (147-260)||(43354934-43355045)
[»] chr7 (4 HSPs)
chr7 (150-257)||(44396407-44396513)
chr7 (400-489)||(44396127-44396216)
chr7 (150-258)||(48252906-48253013)
chr7 (148-236)||(49080736-49080824)
[»] chr2 (11 HSPs)
chr2 (307-385)||(41317395-41317473)
chr2 (398-489)||(33386926-33387017)
chr2 (150-260)||(40095807-40095916)
chr2 (253-300)||(41317160-41317207)
chr2 (253-398)||(40634932-40635077)
chr2 (148-236)||(37069941-37070029)
chr2 (150-210)||(33386646-33386706)
chr2 (147-258)||(32914477-32914587)
chr2 (151-236)||(6858965-6859050)
chr2 (331-398)||(13338603-13338671)
chr2 (150-236)||(7395464-7395550)
[»] chr3 (10 HSPs)
chr3 (253-398)||(2905597-2905741)
chr3 (147-225)||(53464263-53464341)
chr3 (150-225)||(52313856-52313931)
chr3 (148-258)||(49644382-49644491)
chr3 (177-257)||(28939673-28939752)
chr3 (166-236)||(35496096-35496166)
chr3 (150-218)||(15877730-15877798)
chr3 (165-260)||(36177230-36177324)
chr3 (150-236)||(7352577-7352663)
chr3 (181-257)||(1995580-1995655)
[»] chr6 (2 HSPs)
chr6 (152-260)||(2844152-2844258)
chr6 (150-258)||(10682526-10682633)
[»] chr1 (7 HSPs)
chr1 (150-257)||(7900128-7900234)
chr1 (150-225)||(19993426-19993501)
chr1 (150-260)||(43496370-43496479)
chr1 (147-260)||(23571023-23571135)
chr1 (183-260)||(47394377-47394453)
chr1 (158-236)||(10574402-10574480)
chr1 (150-235)||(37457596-37457681)
[»] scaffold0110 (2 HSPs)
scaffold0110 (150-236)||(13773-13859)
scaffold0110 (150-236)||(21510-21596)
[»] scaffold0867 (1 HSPs)
scaffold0867 (150-230)||(3547-3627)


Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 685
Target Start/End: Complemental strand, 37902651 - 37901971
Alignment:
Q  8 acatattcaagtatcttaaaagttaattaaactattccgaagtatatacctacgggtgtttgatagacacgtattcaaagtatacaaaagttgagattta 107  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||    
T  37902651 acatattcaagtatcttaaaagttaaataaactattccaaagtatatacctacgagtgtttgataggcacgtatt-aaagtatataaaagttgagattta 37902553  T
Q  108 agatctgaattttaatcctaattttaaagactatggaagctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatata 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  37902552 agatctgaattttaatcctaattttaaagactatggaagctaagagcaaccacatccatgccacccatattggtggtataaatgagacccacattatata 37902453  T
Q  208 ttatattactttacacttctcaaatattttaaactactcagctacattttttattcaaagtaacgttactttctgaagtaacgattactacacttgtcta 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37902452 ttatattactttacacttctcaaatattttaaactactcaactacattttttattcaaagtaacgttactttctgaagtaacgattactacacttgtcca 37902353  T
Q  308 actccttggatgatttttggcataaaaaactcatatttgatgttacacctggcggacgaatttgaaaaagaagccgctggaggtgctcttacttgcttgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37902352 actccttggatgatttttggcataaaaaactcatatttgatgttaaacctggcggacgaatttgaaaaagaagccgctggaggtgctcttacttgcttgc 37902253  T
Q  408 atgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgctttt-----gcacctataattatgctctaagaaaccttttg 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||| ||||||||||||||    
T  37902252 atgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgcttttgcaaagcacctataattatgctttaagaaaccttttg 37902153  T
Q  503 acaaaaatcaaatcaaatttttgtaagtatatagacacattctccgatgtctatccggttggttggatagcgaaattgtatttccgtgttcaataaaaac 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37902152 acaaaaatcaaatcaaatttttgtaagtatatagacacattctccgatgtctatccggttggttggatagcaaaattgtatttccgtgttcaataaaaac 37902053  T
Q  603 aaacaagtcattatctcattgacttataaaataatttaagattgatatnnnnnnnntgaaatgatatatataaactttcaatg 685  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||    
T  37902052 aaacaagtcattatctcattgacttat-aaataatttaagattgatataaaaaaaatgaaatgatatatataaactttcaatg 37901971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 397 - 493
Target Start/End: Complemental strand, 34383601 - 34383505
Alignment:
Q  397 tacttgcttgcatgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgcttttgcacctataattatgctctaaga 493  Q
    ||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  34383601 tacttgcttgcatgccaaatatcaattgctttctcacacattttcatttggctcagttataccacggtgcttttgcactgataattatactctaaga 34383505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 14662362 - 14662240
Alignment:
Q  254 ttttttattcaaagtaacgttactttctgaagtaacgattactacacttgtctaactccttggatgatttttggcat-aaaaaactcatatttgatgtta 352  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||  ||| |||| |||| |||| ||||||||||||||||||||||    
T  14662362 ttttttatttaaagtaatgttactttctgaagtaacgattactacacctgtccaactatttgcatgaatttt-gcataaaaaaactcatatttgatgtta 14662264  T
Q  353 cacctggcggacgaatttgaaaaa 376  Q
     |||||||||||||| ||||||||    
T  14662263 tacctggcggacgaacttgaaaaa 14662240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 34383826 - 34383738
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacat--tatatattatattactttacacttctcaaatattt 236  Q
    |||||||||||||| |||||| ||| || | |||||||||| ||||||||||  ||||||||||||||||||||||||||||| |||||    
T  34383826 agagcaaccacatccatgccatccaaatggatggtataaataggatccacataatatatattatattactttacacttctcaattattt 34383738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 35205123 - 35205199
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttc 226  Q
    |||||| ||| ||| |||||||||| || |||||||||||||||  ||||||  |||||||||||||||||||||||    
T  35205123 agagcacccaaatccatgccacccaaataggtggtataaatgggtcccacatattatattatattactttacacttc 35205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 35212036 - 35211960
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttc 226  Q
    |||||| ||||||  |||||||||| || |||||||||||||||  ||||||  |||||||||||||||||||||||    
T  35212036 agagcatccacattcatgccacccaaataggtggtataaatgggtcccacatattatattatattactttacacttc 35211960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 34769697 - 34769585
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||| ||||||| |||||| |||| | ||||||||||| |||  |||||| ||| |||||||||| | ||||||| ||| || ||||||| | ||    
T  34769697 ctaagagcatccacatccatgccatccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaatta-tttaaaccattc 34769599  T
Q  247 agctacatttttta 260  Q
    | ||||||||||||    
T  34769598 aactacatttttta 34769585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 4924779 - 4924820
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatg 191  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  4924779 agagcaaccacatccatgccacccatatgggtggtataaatg 4924820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 35205116 - 35205071
Alignment:
Q  165 atgccacccatattggtggtataaatgggatccacattatatatta 210  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||    
T  35205116 atgccatccatattggtggtataaatgggacccacataatatatta 35205071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 35212043 - 35212088
Alignment:
Q  165 atgccacccatattggtggtataaatgggatccacattatatatta 210  Q
    |||||| ||||||||||||||||||||||| |||||| ||||||||    
T  35212043 atgccatccatattggtggtataaatgggacccacataatatatta 35212088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 10523804 - 10523879
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacactt 225  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||   ||||   ||| ||||||||| |||||||||    
T  10523804 agagcacccacatccatgtcacccatattggtggtataaatggaccccactcaatacattatattattttacactt 10523879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 14947657 - 14947742
Alignment:
Q  151 gagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    ||||| ||||||| ||| || |||||| | ||||||||||||   |||||| |||| ||||||||||||| |||| |||| |||||    
T  14947657 gagcacccacatccatgtcatccatatagatggtataaatggatcccacataatattttatattactttatacttttcaattattt 14947742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 39060167 - 39060244
Alignment:
Q  148 taagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacactt 225  Q
    |||||||| ||||||  ||  |||| |||| |||||||||||||||  |||||| ||| |||||||||||| ||||||    
T  39060167 taagagcacccacatacatatcacctatatgggtggtataaatgggtcccacataatacattatattacttcacactt 39060244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 11425752 - 11425844
Alignment:
Q  397 tacttgcttgcatgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgcttttgcacctataattatgctct 489  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  11425752 tacttgcttgcatgccaaatatcagttgctttctgacacattttcatttggctaagttataccacggtgcttttgcaccgataattatgctct 11425844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 11425461 - 11425565
Alignment:
Q  152 agcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagcta 251  Q
    |||||||||||| |||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||| | ||||| |||    
T  11425461 agcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaatta-tttaaccgactcaacta 11425559  T
Q  252 catttt 257  Q
    ||||||    
T  11425560 catttt 11425565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 37479317 - 37479210
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||||||||||| |||||||  |||| | |||||||||||  |||||||| |||||||||||||||||| |||| |||| || ||||||| ||||| |    
T  37479317 agagcaaccacatccatgccacttatatggatggtataaatga-atccacataatatattatattactttaaacttttcaatta-tttaaaccactcaac 37479220  T
Q  250 tacatttttt 259  Q
    ||||||||||    
T  37479219 tacatttttt 37479210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 151 - 257
Target Start/End: Complemental strand, 40279089 - 40278984
Alignment:
Q  151 gagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagct 250  Q
    ||||| ||||||  |||||||||| ||  ||||||||||||||| |||||| |||||||||||||||||| |||| || |||  ||||||| ||||| ||    
T  40279089 gagcacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatattactttatactt-tccaattatttaaaccactcaact 40278991  T
Q  251 acatttt 257  Q
    |||||||    
T  40278990 acatttt 40278984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 18227125 - 18227039
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||| ||||||| ||||||||||| | ||||||||||| |||  |||||| ||| |||||||||| | ||||||| ||| |||||    
T  18227125 agagcatccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattattt 18227039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 4165474 - 4165547
Alignment:
Q  253 attttttattcaaagtaacgttactttctgaagtaacgattactacacttgtctaactccttggatgatttttg 326  Q
    ||||||||||||||||||||||||  ||||||||||| ||||| |||  | || |||||| || ||||||||||    
T  4165474 attttttattcaaagtaacgttacaatctgaagtaacaattaccacagctatcaaactccatgcatgatttttg 4165547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 4165565 - 4165631
Alignment:
Q  331 aaaaaactcatatttgatgttacac-ctggcggacgaatttgaaaaagaagccgctggaggtgctct 396  Q
    |||||| |||||||||| ||||||| ||||| ||| ||  |||||||| ||||||||||||||||||    
T  4165565 aaaaaaatcatatttgaagttacacactggcagacaaacctgaaaaaggagccgctggaggtgctct 4165631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 56716 - 56607
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||||||||||| |||||| ||| || | |||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||| ||||    
T  56716 ctaagagcaaccacatccatgccatccaaatggatggtataaatgggacccacataatatattatattactttacacttctcaatta-tttaaaccactc 56618  T
Q  247 agctacatttt 257  Q
    | |||||||||    
T  56617 aactacatttt 56607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 397 - 489
Target Start/End: Original strand, 5415443 - 5415535
Alignment:
Q  397 tacttgcttgcatgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgcttttgcacctataattatgctct 489  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||||  ||||||||||||||  ||||||||| |||||||||||||    
T  5415443 tacttgcttgcatgccaaatatcagttgctttctgacacattttcatttggccaagttataccacggtatttttgcaccgataattatgctct 5415535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 5415149 - 5415235
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||||||||||| |||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  5415149 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattattt 5415235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 23559987 - 23560093
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||| |||||||||| || |||||||||||||||| |||||| |||||||| |||||||||||||| || |||  ||||||| ||||| |    
T  23559987 agagcacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacattactttacactt-tccaattatttaaaccactcaac 23560085  T
Q  250 tacatttt 257  Q
    ||||||||    
T  23560086 tacatttt 23560093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 52327137 - 52327027
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||| ||||||| |||||||||||||  || |||||||||||  |||||| |||| ||||||||||| |||||| |||| || ||||||  ||||    
T  52327137 ctaagagcagccacatccatgccacccatatgagtagtataaatgggtcccacataatattttatattacttcacacttttcaatta-tttaaatcactc 52327039  T
Q  247 agctacattttt 258  Q
    | ||||||||||    
T  52327038 aactacattttt 52327027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 41377509 - 41377398
Alignment:
Q  148 taagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactca 247  Q
    |||||||| |||| || ||| |||| |||| | | |||||||||||    |||| ||||||||||||||||  |||||||||| |||||| |||||||||    
T  41377509 taagagcatccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatattacttcccacttctcaattatttt-aactactca 41377411  T
Q  248 gctacatttttta 260  Q
     ||||||||||||    
T  41377410 actacatttttta 41377398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 46382144 - 46382056
Alignment:
Q  148 taagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||||| ||||||| ||||||||||  ||||||||||||||||   | || | ||||||||||||| || ||||||||||| |||||    
T  46382144 taagagcatccacatccatgccacccaatttggtggtataaatggaccctacttaatatattatattagttcacacttctcaattattt 46382056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 55875966 - 55876071
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||| ||||||| || | ||| || ||||||||||||||||   | || | |||||||||||||||| ||||||||||| || ||||||||| ||    
T  55875966 ctaagagcatccacatccatactacctattttggtggtataaatggaccctacttaatatattatattacttcacacttctcaatta-tttaaactattc 55876064  T
Q  247 agctaca 253  Q
    | |||||    
T  55876065 aactaca 55876071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 779867 - 779935
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactt 218  Q
    |||||| ||||||| || |||||||||| |||||||||||||||   ||||| ||| ||||||||||||    
T  779867 agagcacccacatccataccacccatatgggtggtataaatgggtctcacataatacattatattactt 779935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 48262962 - 48263051
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatatta---tattactttacacttctcaaatattt 236  Q
    |||||| ||||||| |||||||||| || | ||||||||||| ||  ||||| ||||||||   ||||||||||||||| |||| |||||    
T  48262962 agagcatccacatccatgccacccaaatggatggtataaatgagactcacataatatattatactattactttacacttttcaattattt 48263051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 55875967 - 55875858
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||| || |||||||| |  || |||||||||||  |||||| ||| |||||||||||| |||  |||||| ||  |||||| ||||| |    
T  55875967 agagcatccacatccataccacccatgtgtgtagtataaatgggtcccacataataaattatattacttcacatctctcaatta-cttaaaccactcaac 55875869  T
Q  250 tacatttttta 260  Q
    |||||||||||    
T  55875868 tacatttttta 55875858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 43354934 - 43355045
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||| ||||||| ||| ||  ||||||| |||||||||| |  |||||   ||||||||||||||||||||| | |||| || ||||||| ||||    
T  43354934 ctaagagcatccacatccatgacattcatattgatggtataaatagactccactcaatatattatattactttacacct-tcaatta-tttaaaccactc 43355031  T
Q  247 agctacatttttta 260  Q
    |  |||||||||||    
T  43355032 aattacatttttta 43355045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 44396513 - 44396407
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||||||||||| |||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||| | ||||| |    
T  44396513 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaatta-tttaacccactcaac 44396415  T
Q  250 tacatttt 257  Q
    ||||||||    
T  44396414 tacatttt 44396407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 44396216 - 44396127
Alignment:
Q  400 ttgcttgcatgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgcttttgcacctataattatgctct 489  Q
    |||||||||||  |||||||||||||||||| ||| |||||||||||||  ||||||||||| ||| ||||||||| |||||||||||||    
T  44396216 ttgcttgcatgtcaaatatcagttgctttctgacacattttcatttggccaagttataccacagtgtttttgcaccgataattatgctct 44396127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 48253013 - 48252906
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||| |||||||||||||  || |||||||||||  ||| || |||| ||||||||||| |||||| || |||  ||||||| ||||| |    
T  48253013 agagcacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatattacttcacactt-tccaattatttaaaccactcaac 48252915  T
Q  250 tacattttt 258  Q
    |||||||||    
T  48252914 tacattttt 48252906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 49080736 - 49080824
Alignment:
Q  148 taagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||||| ||||||| ||| || ||||||  || |||||||||||    |||| |||||||||||||||| |||||| |||| |||||    
T  49080736 taagagcacccacatccatgtcatccatatgagttgtataaatgggtcttacataatatattatattacttcacacttttcaattattt 49080824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 307 - 385
Target Start/End: Original strand, 41317395 - 41317473
Alignment:
Q  307 aactccttggatgatttttggcataaaaaactcatatttgatgttacacctggcggacgaatttgaaaaagaagccgct 385  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  41317395 aactccttgcatgatttttggcttaaaaaactcatatttgatattacacctggtggacgaacttgaaaaagaaaccgct 41317473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 398 - 489
Target Start/End: Original strand, 33386926 - 33387017
Alignment:
Q  398 acttgcttgcatgctaaatatcagttgctttctaacatattttcatttggctcagttataccacggtgcttttgcacctataattatgctct 489  Q
    |||||||| ||||  |||||||||||||||||| ||| |||||||| ||||||||||||||||  ||||||||||||  |||||||||||||    
T  33386926 acttgcttacatgtcaaatatcagttgctttctgacacattttcatgtggctcagttataccattgtgcttttgcactgataattatgctct 33387017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 40095916 - 40095807
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||||||| ||  ||| ||||||||||||||||   |||  | |||||||||||||||||||||||||||| || ||||||||||||| |    
T  40095916 agagcatccacatctatgtcattcattttggtggtataaatggaccccatctaatatattatattactttacacttctcaatta-tttaaactactcaac 40095818  T
Q  250 tacatttttta 260  Q
    |||||||||||    
T  40095817 tacatttttta 40095807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 41317160 - 41317207
Alignment:
Q  253 attttttattcaaagtaacgttactttctgaagtaacgattactacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41317160 attttttattcaaagtaacgttactttctgaagtaacgattactacac 41317207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 40634932 - 40635077
Alignment:
Q  253 attttttattcaaagtaacgttactttctgaagtaacgattactacacttgtctaactccttggatgatttttggcataaaaaactcatatttgatgtta 352  Q
    ||||| |||||||||||| |||||||||| |||||||||||  ||||  || |  ||||| |  |||| |||||||| ||||||||||||||||| ||||    
T  40634932 attttgtattcaaagtaaagttactttctaaagtaacgattgttacagctggcgcactccatacatgaattttggcaaaaaaaactcatatttgaagtta 40635031  T
Q  353 cacctggcggacgaatttgaaaaagaagccgctggaggtgctctta 398  Q
    ||  |||| ||||||  |||||| | | |||||||||||| |||||    
T  40635032 cagttggcagacgaacctgaaaatggaaccgctggaggtgttctta 40635077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 37070029 - 37069941
Alignment:
Q  148 taagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||||| ||||||| ||||||||||| | |||||||||||||||  |||||| ||||| ||||||| |||||||||| ||| |||||    
T  37070029 taagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttacacttcccaattattt 37069941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 33386646 - 33386706
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatatta 210  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||| |||||| ||||||||    
T  33386646 agagcaaccacatccatgccacccaaatgagtggtataaatgggacccacataatatatta 33386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 32914587 - 32914477
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||| ||||||| ||| || ||||||  || |||||||||||  ||| || |||| ||||||||||| |||||| |||| || ||||||| ||||    
T  32914587 ctaagagcacccacatccatgtcatccatatgagtagtataaatgggtcccatataatattttatattacttcacacttttcaatta-tttaaaccactc 32914489  T
Q  247 agctacattttt 258  Q
    | ||||||||||    
T  32914488 aactacattttt 32914477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 6858965 - 6859050
Alignment:
Q  151 gagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    ||||| ||||||| || |||||||||| |||||||||||||||  |||| | ||| | |||||||||| ||||||| ||| |||||    
T  6858965 gagcatccacatccataccacccatatgggtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattattt 6859050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 13338603 - 13338671
Alignment:
Q  331 aaaaaactcatatttgatgttacac-ctggcggacgaatttgaaaaagaagccgctggaggtgctctta 398  Q
    |||||| |||||| |||  |||||| ||||||||||||| |||||||| ||||| ||||||||||||||    
T  13338603 aaaaaattcatatatgaaattacacactggcggacgaatctgaaaaaggagccgttggaggtgctctta 13338671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 7395550 - 7395464
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||| ||| ||| ||||||| ||||| ||| |||||||||||  |||| | |||| ||||||||||| |||||| |||| |||||    
T  7395550 agagcacccatatccatgccactcatatgggtagtataaatgggtcccacctaatattttatattacttcacacttttcaattattt 7395464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 2905597 - 2905741
Alignment:
Q  253 attttttattcaaagtaacgttactttctgaagtaacgattactacacttgtctaactccttggatgatttttggcataaaaaactcatatttgatgtta 352  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||  || |  ||||| || |||| |||||||| |||||||||||| |||| ||||    
T  2905597 attttgtattcaaagtaacgttactttctgaagtaacgattgttacagctggcgcactccatgcatgaattttggca-aaaaaactcatagttgaagtta 2905695  T
Q  353 cacctggcggacgaatttgaaaaagaagccgctggaggtgctctta 398  Q
    || || ||||||| |  |||||| | | ||||||||||||||||||    
T  2905696 cagctagcggacggacctgaaaatggaaccgctggaggtgctctta 2905741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 53464263 - 53464341
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacactt 225  Q
    ||||||||| ||||||| |||||||||| || |||||||||||||||| ||||||  || |||||||||||||||||||    
T  53464263 ctaagagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactt 53464341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 52313856 - 52313931
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacactt 225  Q
    |||||| ||||||| |||||||||| || |||||||||||||||| ||||||  || |||||||||||||||||||    
T  52313856 agagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactt 52313931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 49644491 - 49644382
Alignment:
Q  148 taagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactca 247  Q
    |||||| | |||||| ||| |||||||||| |||||| |||||||   |||| | |||||||||||||||| ||||||||||| || ||||||| |||||    
T  49644491 taagagtatccacatttattccacccatatgggtggtttaaatggaccccacttaatatattatattacttcacacttctcaatta-tttaaaccactca 49644393  T
Q  248 gctacattttt 258  Q
     ||||||||||    
T  49644392 actacattttt 49644382  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 28939673 - 28939752
Alignment:
Q  177 ttggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagctacatttt 257  Q
    |||||||||||||| |   |||| | |||||||||||||||| ||||||||||| || ||||||||||||| |||||||||    
T  28939673 ttggtggtataaatagaccccacctaatatattatattacttcacacttctcaatta-tttaaactactcaactacatttt 28939752  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 35496096 - 35496166
Alignment:
Q  166 tgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    ||||||| ||||  ||||||||||||||  | |||| |||||||||||||||| ||||||||||| |||||    
T  35496096 tgccacctatatgagtggtataaatgggtcctacataatatattatattacttcacacttctcaattattt 35496166  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 15877730 - 15877798
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactt 218  Q
    |||||| || |||| || |||||||||| |||||||||||||||  |||||| ||| ||||||||||||    
T  15877730 agagcacccccatccataccacccatatgggtggtataaatgggtcccacataatacattatattactt 15877798  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 36177324 - 36177230
Alignment:
Q  165 atgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagctacatttttta 260  Q
    |||||||| |||| | |||||||||||||  |||||| ||| |||||||||||| |||||| || |||  ||| ||| ||||| ||||||||||||    
T  36177324 atgccacctatatggatggtataaatgggtcccacataatagattatattacttcacactt-tccaattatttgaaccactcatctacatttttta 36177230  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 7352663 - 7352577
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||| ||||||| ||| ||||||| | ||||||||||| |||  |||||| ||| |||||||||| | ||||||| ||| |||||    
T  7352663 agagcatccacatccatgtcacccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattattt 7352577  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 1995580 - 1995655
Alignment:
Q  181 tggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagctacatttt 257  Q
    |||||||||||||  |||||| ||| |||||||||||| ||||||| ||| || ||||||| ||| | |||||||||    
T  1995580 tggtataaatgggtcccacataatacattatattacttcacacttcccaatta-tttaaaccacttaactacatttt 1995655  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 2844258 - 2844152
Alignment:
Q  152 agcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagcta 251  Q
    |||||||||||| |||||||| |||| ||||||||||||| | | ||||| ||| |||||||||||| ||||||| ||| || ||||||| ||||| |||    
T  2844258 agcaaccacatc-atgccaccgatatgggtggtataaatgagtttcacataatacattatattacttcacacttcccaatta-tttaaaccactcaacta 2844161  T
Q  252 catttttta 260  Q
    |||||||||    
T  2844160 catttttta 2844152  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 10682633 - 10682526
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||  || |||||||||| | |||| |||||||   |||| | |||||||||||||||| ||||||||||| || ||||||| ||||| |    
T  10682633 agagcatccacattcattccacccatatggatggtttaaatggaccccacttaatatattatattacttcacacttctcaatta-tttaaaccactcaac 10682535  T
Q  250 tacattttt 258  Q
    |||||||||    
T  10682534 tacattttt 10682526  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 7900128 - 7900234
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||| |||||||| | || | | |||||||||||| |||||| |||||||||||||||||| ||||| ||| || ||||||| ||||| |    
T  7900128 agagcacccacatccatgccacctaaatggatcgtataaatgggacccacataatatattatattactttatacttcccaatta-tttaaaccactcaac 7900226  T
Q  250 tacatttt 257  Q
    ||||||||    
T  7900227 tacatttt 7900234  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 19993501 - 19993426
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacactt 225  Q
    |||||| ||||||| |||| || || || ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  19993501 agagcatccacatccatgcaactcaaatgggtggtatagatgggatccacataatatattatattactttacactt 19993426  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 43496370 - 43496479
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagc 249  Q
    |||||| ||||||| ||||||||||| | | ||||||||| |||  |||||| ||| |||||||||| | ||||||||||| || ||||||||| ||| |    
T  43496370 agagcatccacatccatgccacccatttggatggtataaacgggtcccacataatacattatattacctcacacttctcaatta-tttaaactattcaac 43496468  T
Q  250 tacatttttta 260  Q
    |||||||||||    
T  43496469 tacatttttta 43496479  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 23571135 - 23571023
Alignment:
Q  147 ctaagagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactc 246  Q
    ||||||||| || |||| || |||||||||| |||||||||||||||  |||||| ||| |||||||||||| ||| || || | || ||||||| ||||    
T  23571135 ctaagagcacccgcatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccatta-tttaaacaactc 23571037  T
Q  247 agctacatttttta 260  Q
    | ||| ||||||||    
T  23571036 aactatatttttta 23571023  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 47394377 - 47394453
Alignment:
Q  183 gtataaatgggatccacattatatattatattactttacacttctcaaatattttaaactactcagctacatttttta 260  Q
    ||||||||||| ||||||| ||| |||||||||||| ||||||| ||| || ||||||||||||  ||||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaatta-tttaaactactcgtctacatttttta 47394453  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 10574480 - 10574402
Alignment:
Q  158 cacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||| |||||||  ||||  |||||||||||| | ||||||| ||||| |||||||||| ||| ||||||| |||||    
T  10574480 cacatccatgccactaatataagtggtataaatgagttccacataatataatatattacttcacatttctcaattattt 10574402  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 37457596 - 37457681
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatatt 235  Q
    |||||| ||||||| |  |||||||||| |||||||||||||||  |||| | ||| | ||||||| || ||||||||||| ||||    
T  37457596 agagcatccacatccacaccacccatataggtggtataaatgggtcccacgtaatacaatatattatttcacacttctcaattatt 37457681  T

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Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 13773 - 13859
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||| ||||||| ||||||||||| | |||||||||||||||  |||||| ||||| ||||||| |||||||||| ||| |||||    
T  13773 agagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttacacttcccaattattt 13859  T

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Target: scaffold0110; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 21510 - 21596
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaaatattt 236  Q
    |||||| ||||||| ||||||||||| | |||||||||||||||  |||||| ||||| ||||||| |||||||||| ||| |||||    
T  21510 agagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttacacttcccaattattt 21596  T

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Target: scaffold0867 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 3627 - 3547
Alignment:
Q  150 agagcaaccacatctatgccacccatattggtggtataaatgggatccacattatatattatattactttacacttctcaa 230  Q
    |||||| ||||||  || |||||||||| |||||| ||||| |   |||| | |||||||||||||||| |||||||||||    
T  3627 agagcatccacattcattccacccatatgggtggtttaaatagaccccacttaatatattatattacttcacacttctcaa 3547  T

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