View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5543-Insertion-6 (Length: 540)
Name: NF5543-Insertion-6
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543-Insertion-6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 533
Target Start/End: Complemental strand, 9452473 - 9451947
Alignment:
| Q |
7 |
aaagttgttaagtaaaaggacatgaattt-ataacttacacaccttagatatttctcatccattctcatgaatatgcacaatccttgattttatnnnnnn |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9452473 |
aaagttgttaagtaaaaggacatgaattttataacttacacaccttagatatttctcatccattctcatgaatatgcacaatccttgattttataaaaaa |
9452374 |
T |
|
| Q |
106 |
nttacacatcaatattaaggaatagttaattatattacctgttttcgtgtcatacagtttcaaccaggagcatgcttggcagcaggaaagaatatctgag |
205 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9452373 |
attacacatcattattaaggaatatttaataatattacctgttttcgtgtcatacagtttcaaccaggagcatgcttggcagcaggaaagaatatccgag |
9452274 |
T |
|
| Q |
206 |
gcatgtgtagtgcnnnnnnncgtgtatggttttcccaaggttgtccaagcagaattggaatccttgcagttgtaatccttgggactatgcaacatacgat |
305 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| || |
|
|
| T |
9452273 |
gcatgtgtcgtgcacaaaaacgtgtatggttttcccaaggttgtccaagcagaattggaatccttgcagttgtaatccttgg-actatacatcatagcat |
9452175 |
T |
|
| Q |
306 |
atgctcctgaaattggaacagtgcgttgggttctaatctcggagatttatccattgcgggtcaaaagaataggtggaggtttagcagcagttttcaactg |
405 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9452174 |
atgctcctggaattggaacagtgccttgggttctaaactcggagatttatccattgcggttcagaggaataggtggaggtatagcagcagttttcaactg |
9452075 |
T |
|
| Q |
406 |
gtgtggtaatctaattgtgattgagtcattcttgagcatgttataggctctaggaactatcagaacattcctccgctttgcagggttgtctaagaatggc |
505 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||| | |||||||||||| |||||||||||| ||| || |||| |
|
|
| T |
9452074 |
gtgtgccaatctaattgtgagtgagtcattcttgagcatgataaaggctctaggaactaccggaacattcctcctctttgcagggttctctttgattggc |
9451975 |
T |
|
| Q |
506 |
cttgtagccatttatttgttagtgcctg |
533 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9451974 |
cttgtagccatttatttgttagtgcctg |
9451947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 152 - 533
Target Start/End: Complemental strand, 9441101 - 9440721
Alignment:
| Q |
152 |
gtgtcatacagtttcaaccaggagcatgcttggcagcaggaaagaatatctgaggcatgtgtagtgcnnnnnnncgtgtatggttttcccaaggttgtcc |
251 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||| |||| | ||||||||||| ||||||||||| |
|
|
| T |
9441101 |
gtgtcatacagtttcttccaggagcatgtttggcagcagaaaagaatatccgaggcatgtgttgtgcacaaaattgcgtatggttttctcaaggttgtcc |
9441002 |
T |
|
| Q |
252 |
aagcagaattggaatccttgcagttgtaatccttgggactatgcaacatacgatatgctcctgaaattggaacagtgcgttgggttctaatctcggagat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||| ||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
9441001 |
aagcagaattggaatccttgcagttgtaatccttgg-actatacataatatcatatgctcctggaatcggaacagtgccttgggttctaaactcggagat |
9440903 |
T |
|
| Q |
352 |
ttatccattgcgggtcaaaagaataggtggaggtttagcagcagttttcaactggtgtggtaatctaattgtgattgagtcattcttgagcatgttatag |
451 |
Q |
| |
|
|||||| || || ||| | |||||||||||||| |||||||||||||||||||||||| |||| ||||| ||| |||||||||||| |||||| || || |
|
|
| T |
9440902 |
ttatcctttaaggttcagaggaataggtggaggtatagcagcagttttcaactggtgtgctaatgtaattatgagtgagtcattcttaagcatgataaag |
9440803 |
T |
|
| Q |
452 |
gctctaggaactatcagaacattcctccgctttgcagggttgtctaagaatggccttgtagccatttatttgttagtgcctg |
533 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| ||| || ||| ||||||||||||||||||| ||||||| |
|
|
| T |
9440802 |
actctaggaactactggaacattcctcacctttgcagggttctctttgattggatttgtagccatttatttgttggtgcctg |
9440721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University