View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5543-Insertion-8 (Length: 365)

Name: NF5543-Insertion-8
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5543-Insertion-8
NF5543-Insertion-8
[»] chr6 (2 HSPs)
chr6 (69-183)||(7368401-7368515)
chr6 (300-365)||(7368628-7368693)
[»] chr7 (3 HSPs)
chr7 (69-183)||(45632078-45632192)
chr7 (300-361)||(45632306-45632367)
chr7 (69-183)||(26643590-26643705)
[»] chr3 (3 HSPs)
chr3 (300-361)||(53159608-53159669)
chr3 (69-148)||(53161067-53161146)
chr3 (144-183)||(53159778-53159817)
[»] chr2 (2 HSPs)
chr2 (72-183)||(39905551-39905663)
chr2 (308-344)||(39905787-39905823)
[»] chr4 (1 HSPs)
chr4 (69-164)||(51032700-51032796)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 7368401 - 7368515
Alignment:
Q  69 catcaacaacaaccgtgagtactattgctgaaaaaggaagaggtcgtatttgtcactaggacttcattccaattgctacaacgatccataaccggtaaca 168  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7368401 catcaacaacaaccgtgagtactattgctgaaaaaggaagaggccgtatttgtcactaggacttcattccaattgctacaacgatgcataaccggtaaca 7368500  T
Q  169 attcaatatggtgca 183  Q
    |||||||||||||||    
T  7368501 attcaatatggtgca 7368515  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 7368628 - 7368693
Alignment:
Q  300 gttctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatgggcttcttc 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368628 gttctttaataactatagtgaccgtggcagttaaggtgtcgccggtttgacattatgggcttcttc 7368693  T

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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 45632078 - 45632192
Alignment:
Q  69 catcaacaacaaccgtgagtactattgctgaaaaaggaagaggtcgtattt-gtcactaggacttcattccaattgctacaacgatccataaccggtaac 167  Q
    ||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  45632078 catcaacaacaaccgtgagtactattgctgaaaaatgaagaga-cgtattttgtcactaggacttcattccagttgctacaacgatccataaccggtaac 45632176  T
Q  168 aattcaatatggtgca 183  Q
    ||||||||||||||||    
T  45632177 aattcaatatggtgca 45632192  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 45632306 - 45632367
Alignment:
Q  300 gttctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatgggctt 361  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45632306 gttctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatgggctt 45632367  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 26643590 - 26643705
Alignment:
Q  69 catcaacaacaaccgtgagtactattgctgaaaaaggaagaggtcgt-atttgtcactaggacttcattccaattgctacaacgatccataaccggtaac 167  Q
    |||||||||||| ||||||||||||||||||||| |||||||  |||  |||| ||||| |||||||| ||| | |||| | |||||||||||||||||     
T  26643590 catcaacaacaatcgtgagtactattgctgaaaagggaagagaccgtgttttgccactacgacttcataccagtcgctaaagcgatccataaccggtaat 26643689  T
Q  168 aattcaatatggtgca 183  Q
    || | |||||||||||    
T  26643690 aactaaatatggtgca 26643705  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 53159669 - 53159608
Alignment:
Q  300 gttctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatgggctt 361  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53159669 gttctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatgggctt 53159608  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 53161146 - 53161067
Alignment:
Q  69 catcaacaacaaccgtgagtactattgctgaaaaaggaagaggtcgta-tttgtcactaggacttcattccaattgctaca 148  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||||| | ||||||||    
T  53161146 catcaacaacaaccgtgagtattattgctgaaaaaggaaga-gacgtattttgtcactaggacttcattcaagttgctaca 53161067  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 53159817 - 53159778
Alignment:
Q  144 ctacaacgatccataaccggtaacaattcaatatggtgca 183  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53159817 ctacaacgatccataaccggtaacaattcaatatggtgca 53159778  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 39905551 - 39905663
Alignment:
Q  72 caacaacaaccgtgagtactattgctgaaaaaggaagaggtcgtattt-gtcactaggacttcattccaattgctacaacgatccataaccggtaacaat 170  Q
    |||||||||| |||||||| |   ||||||| |||||||| ||| ||| |||||||||||||||| ||| |||||| || ||||||||||||||||||||    
T  39905551 caacaacaacggtgagtaccacaactgaaaagggaagaggccgtgttttgtcactaggacttcataccagttgctaaaaagatccataaccggtaacaat 39905650  T
Q  171 tcaatatggtgca 183  Q
    | |||||||||||    
T  39905651 taaatatggtgca 39905663  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 39905787 - 39905823
Alignment:
Q  308 ataactagagtgaccgtggcagttaaggtgtcgccgg 344  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  39905787 ataactggagtgaccgtgacagttaaggtgtcgccgg 39905823  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 51032796 - 51032700
Alignment:
Q  69 catcaacaacaaccgtgagtactattgctgaaaaaggaagaggtcgt-atttgtcactaggacttcattccaattgctacaacgatccataaccggt 164  Q
    ||||||||| ||  ||||||| |||||||||||| |||||||| |||  |||| |||||  ||||||| ||  | |||| |||||||||||||||||    
T  51032796 catcaacaaaaatggtgagtattattgctgaaaagggaagaggccgtgttttgccactacaacttcataccggtcgctaaaacgatccataaccggt 51032700  T

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