View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_high_11 (Length: 224)
Name: NF5543_high_11
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 13793251 - 13793038
Alignment:
| Q |
11 |
tcaacaccacactcctcattcccttcatcttcatcttcctccaaatcctctattcctttctcataaaacacaaacctcgacttccaccgggtccacgtgg |
110 |
Q |
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| T |
13793251 |
tcaacactacactcctcattctcttcatcttcatcttcctccaaatcctctattcctttctcataaaacacaaacctcgacttccaccgggtccacgtgg |
13793152 |
T |
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| Q |
111 |
cctccccatcataggcaatctccatcaactggttcaaaagtcccaccaaaccctcgcaaaactctccaaaatccactgcccaataatgtcctaaaaattg |
210 |
Q |
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| T |
13793151 |
cctccccatcataggcaatctccatcaactgggtcaaaagccccaccaaaccctcgcaaaactctccaaaatccacggcccaataatgtccttaaaattg |
13793052 |
T |
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| Q |
211 |
ggccgattaactac |
224 |
Q |
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|||||| ||||||| |
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| T |
13793051 |
ggccgaataactac |
13793038 |
T |
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