View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_high_12 (Length: 213)
Name: NF5543_high_12
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 11390021 - 11390201
Alignment:
| Q |
19 |
atatcattcgaatgtggttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggtt |
118 |
Q |
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| T |
11390021 |
atatcattcgactgtggttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggtt |
11390120 |
T |
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| Q |
119 |
ggagataaatacaaattcttggagtatttcttaggggtttctctattctgattataaatacacattcttattctccctttg |
199 |
Q |
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| T |
11390121 |
ggagataaatacaaattcttggagtatttcttaggggtttctctattctgattataaacacacatttttattctccctttg |
11390201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 11420603 - 11420423
Alignment:
| Q |
19 |
atatcattcgaatgtggttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggtt |
118 |
Q |
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| T |
11420603 |
atatcattcgattgttgttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgtgtt |
11420504 |
T |
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| Q |
119 |
ggagataaatacaaattcttggagtatttcttaggggtttctctattctgattataaatacacattcttattctccctttg |
199 |
Q |
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| T |
11420503 |
ggagataaatacaaattcttggagtatttcttaggggtttttctattctgattataaatacacatttttattctccctttg |
11420423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 11389594 - 11389667
Alignment:
| Q |
17 |
aaatatcattcgaatgtggttaaatatttagataacaacaaaataaaataa--aagacaaattttgttacaaaa |
88 |
Q |
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| T |
11389594 |
aaatatcattcaattgtgtttaaatatttacataacaacaaaataaagtaaacaaaacaaattgtgttacaaaa |
11389667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 11421178 - 11421101
Alignment:
| Q |
37 |
taaatatttagataacaacaaaataaaataaa-----agacaaattttgttacaaaaatacattattataggtaacaaa |
110 |
Q |
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||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
11421178 |
taaatatttagataacatcaaaataaaataaaaaaacaaacaaattttgtta-aaaaaaacattattataagtaacaaa |
11421101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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