View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5543_low_12 (Length: 244)

Name: NF5543_low_12
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5543_low_12
NF5543_low_12
[»] chr2 (3 HSPs)
chr2 (1-235)||(28741602-28741836)
chr2 (1-235)||(28733410-28733644)
chr2 (6-231)||(28717744-28717970)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28741602 - 28741836
Alignment:
Q  1 taatctttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28741602 taatctttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgtgattcatccatgattgatatccaaatctt 28741701  T
Q  101 ggaagatatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741702 ggaagatatccctgtcaagttttttaactagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacat 28741801  T
Q  201 gacaaagattctagtttcacctaacatgatgatgt 235  Q
    ||||||||||||||||| |||||||||||||||||    
T  28741802 gacaaagattctagtttaacctaacatgatgatgt 28741836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28733410 - 28733644
Alignment:
Q  1 taatctttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatctt 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  28733410 taatctttgaattttattcattgactgaaacatcgttgatattagattatccacaattacgtgtcaattgggattcatccatgattgatatacaaatctt 28733509  T
Q  101 ggaagatatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacat 200  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||    
T  28733510 ggaagatatccctgtcaagttatttatctagaaatgcactgataatttagacaaaaaatatttgtagtaaagcatacatctaccttgtgtaccttcacat 28733609  T
Q  201 gacaaagattctagtttcacctaacatgatgatgt 235  Q
    |||||| ||||||||||||||||||||||||||||    
T  28733610 gacaaatattctagtttcacctaacatgatgatgt 28733644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 28717744 - 28717970
Alignment:
Q  6 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggaag 105  Q
    ||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| |||| || ||||||||||    
T  28717744 tttgaatttgattcactgactgaaacatcattggtattagattctccacaattatgcgttaattgagattcatccatgattaatatacatatcttggaag 28717843  T
Q  106 atatccctgtcaagttttttatctag-aaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgaca 204  Q
    ||||||||||||||  ||| |||||| |||||||| | |||||||||  |||| | ||||||||||| || |||||||||||||||| |||||||||| |    
T  28717844 atatccctgtcaagaatttcatctagaaaatgcaccgataatttagagggaaattctttgtagtaaagcatacatctaccttgtgtaccttcacatgaaa 28717943  T
Q  205 aagattctagtttcacctaacatgatg 231  Q
    || |||||||||||||  |||||||||    
T  28717944 aatattctagtttcactaaacatgatg 28717970  T

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