View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5543_low_14 (Length: 237)

Name: NF5543_low_14
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5543_low_14
NF5543_low_14
[»] chr2 (15 HSPs)
chr2 (154-230)||(28741301-28741377)
chr2 (108-229)||(19616340-19616461)
chr2 (1-58)||(28741543-28741600)
chr2 (1-45)||(28733364-28733408)
chr2 (112-229)||(15342279-15342397)
chr2 (3-52)||(28670874-28670923)
chr2 (109-192)||(21626586-21626670)
chr2 (1-52)||(28642291-28642342)
chr2 (1-52)||(28651152-28651203)
chr2 (1-52)||(28691494-28691545)
chr2 (162-229)||(28719057-28719124)
chr2 (57-92)||(28741387-28741422)
chr2 (155-230)||(29800419-29800494)
chr2 (2-52)||(28675018-28675068)
chr2 (13-51)||(28717704-28717742)
[»] chr4 (4 HSPs)
chr4 (108-229)||(30040750-30040872)
chr4 (112-229)||(11420924-11421042)
chr4 (108-192)||(19365423-19365508)
chr4 (124-215)||(9537881-9537973)
[»] chr6 (6 HSPs)
chr6 (126-192)||(23846700-23846767)
chr6 (108-229)||(20736604-20736726)
chr6 (108-229)||(21994492-21994614)
chr6 (108-222)||(4073480-4073595)
chr6 (108-229)||(8612820-8612941)
chr6 (156-229)||(22560460-22560533)
[»] scaffold0466 (1 HSPs)
scaffold0466 (112-229)||(13225-13343)
[»] scaffold0136 (1 HSPs)
scaffold0136 (109-230)||(8636-8758)
[»] chr7 (11 HSPs)
chr7 (108-229)||(3587813-3587935)
chr7 (109-227)||(15170307-15170428)
chr7 (108-229)||(19393700-19393822)
chr7 (108-229)||(28130465-28130587)
chr7 (108-192)||(18259437-18259522)
chr7 (108-229)||(47167135-47167257)
chr7 (108-192)||(2935935-2936020)
chr7 (121-197)||(19388469-19388546)
chr7 (124-192)||(31190756-31190825)
chr7 (108-229)||(15999886-16000008)
chr7 (108-229)||(24443603-24443724)
[»] chr3 (4 HSPs)
chr3 (108-227)||(15526658-15526777)
chr3 (108-227)||(11787491-11787611)
chr3 (108-227)||(25979006-25979126)
chr3 (108-178)||(28088120-28088192)
[»] chr5 (10 HSPs)
chr5 (108-230)||(20100518-20100641)
chr5 (108-229)||(7865710-7865831)
chr5 (108-229)||(12765270-12765391)
chr5 (108-229)||(5097555-5097677)
chr5 (108-229)||(12704154-12704275)
chr5 (108-229)||(39535368-39535490)
chr5 (108-229)||(9812013-9812134)
chr5 (109-229)||(31652060-31652181)
chr5 (108-230)||(26245006-26245129)
chr5 (108-192)||(26130006-26130091)
[»] scaffold0034 (1 HSPs)
scaffold0034 (109-229)||(83291-83412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (108-228)||(40265-40386)
[»] scaffold0376 (1 HSPs)
scaffold0376 (108-229)||(11806-11927)
[»] scaffold0063 (1 HSPs)
scaffold0063 (108-227)||(45226-45346)
[»] scaffold0086 (1 HSPs)
scaffold0086 (121-229)||(53682-53791)
[»] chr1 (2 HSPs)
chr1 (108-192)||(8727568-8727653)
chr1 (110-229)||(633840-633960)
[»] chr8 (3 HSPs)
chr8 (108-227)||(18835254-18835374)
chr8 (108-229)||(22659770-22659894)
chr8 (108-230)||(20539672-20539798)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 28741377 - 28741301
Alignment:
Q  154 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28741377 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtatgtagactgatgat 28741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 19616340 - 19616461
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||| | || |||   ||    
T  19616340 tgacttaatcataagattacattaacataaagaacactattcttaaatgtatttgtagtcaagctttaatatgaattgggataata-ataagcgtcgaga 19616438  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  19616439 ctattatgtatgtagactgatga 19616461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28741600 - 28741543
Alignment:
Q  1 tatccctagaattgatttaccaggaatccatgatgatcctgttttgagagatacagtt 58  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28741600 tatccgtagaattgatttaccaggaatccatgatgatcttgttttgagagatacagtt 28741543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28733408 - 28733364
Alignment:
Q  1 tatccctagaattgatttaccaggaatccatgatgatcctgtttt 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28733408 tatccctagaattgatttaccaggaatccatgatgatcctgtttt 28733364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 15342397 - 15342279
Alignment:
Q  112 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 210  Q
    ||||| || ||||||||||| |||||| |||||||||||| ||  ||| | |||||||  ||||||||||||||||||||||  ||| |||   ||||||    
T  15342397 ttaatcatgagattacattaccataaagaacactattctttaatgtatatgtagtcaagatttaatataaattgggataataataaagcgtggagactat 15342298  T
Q  211 tatgtgtgtagactgatga 229  Q
    ||||| |||||| ||||||    
T  15342297 tatgtatgtagattgatga 15342279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 28670923 - 28670874
Alignment:
Q  3 tccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 52  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  28670923 tccctacaattgacttaacaggaatccatgatgatcctgttttgagagat 28670874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 21626586 - 21626670
Alignment:
Q  109 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    |||||||| || | |||||||||||||||| |||| ||||||||||| ||||   ||||||| ||||||||||| ||||||||||    
T  21626586 gacttaatcatgacattacattaacataaagaacaatattcttaaaagtatccgaagtcaaattttaatataaaatgggataata 21626670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28642342 - 28642291
Alignment:
Q  1 tatccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 52  Q
    |||||||| |||||| |||  |||||||||||||||||||| ||||||||||    
T  28642342 tatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagat 28642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28651203 - 28651152
Alignment:
Q  1 tatccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 52  Q
    |||||||| |||||| |||  |||||||||||||||||||| ||||||||||    
T  28651203 tatccctacaattgacttaaaaggaatccatgatgatcctgctttgagagat 28651152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28691545 - 28691494
Alignment:
Q  1 tatccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 52  Q
    |||||||| ||||||  || |||||||||||||||||| |||||||||||||    
T  28691545 tatccctacaattgacctaacaggaatccatgatgatcttgttttgagagat 28691494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 28719124 - 28719057
Alignment:
Q  162 tagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 229  Q
    |||||||  |||| ||||||||| |||||||  ||||||||  ||||||||||| |||||||||||||    
T  28719124 tagtcaagttttagtataaattgagataataataaaacgtagagactattatgtatgtagactgatga 28719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 28741422 - 28741387
Alignment:
Q  57 ttattatgcttgttgtaagattaataaagagatagt 92  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28741422 ttattatacttgttgtaagattaataaagagatagt 28741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 29800419 - 29800494
Alignment:
Q  155 atatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 230  Q
    |||| |||| |||| |||||||| ||||||||||||||  ||| || |  ||||||||||| ||||||||||||||    
T  29800419 atatatatattcaagctttaatacaaattgggataataataaagcggaaagactattatgtatgtagactgatgat 29800494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 28675068 - 28675018
Alignment:
Q  2 atccctagaattgatttaccaggaatccatgatgatcctgttttgagagat 52  Q
    ||||||| |||||| ||| |||||||||| ||||||||| |||||||||||    
T  28675068 atccctacaattgacttaacaggaatccacgatgatcctcttttgagagat 28675018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 28717742 - 28717704
Alignment:
Q  13 tgatttaccaggaatccatgatgatcctgttttgagaga 51  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  28717742 tgatttactaggaatccatgatggtcctgttttgagaga 28717704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 30040872 - 30040750
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||||| |||||||||||||  ||| | |   ||    
T  30040872 tgacttaatcatgagattacattaacataaagaacactattcttaaatgtatctatagtcaagcgttaatatgaattgggataataataaagcatcgaga 30040773  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| | |||||||||||    
T  30040772 ctattatgtatatagactgatga 30040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 11420924 - 11421042
Alignment:
Q  112 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 210  Q
    ||||| || |||||||||||||||||| ||| |||||||||||  ||||  ||||||||||||||||| |||| ||||||||  ||| | |   ||||||    
T  11420924 ttaatcattagattacattaacataaagaacgctattcttaaatgtatccgtagtcaaactttaatatgaattaggataataataaagcttcgagactat 11421023  T
Q  211 tatgtgtgtagactgatga 229  Q
    ||||| |||||||||||||    
T  11421024 tatgtatgtagactgatga 11421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 19365423 - 19365508
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    ||||||||| || ||||||||||||| |||| ||| |||||||||||  ||||  ||||||| ||||||||||||||||| |||||    
T  19365423 tgacttaatcatgagattacattaacgtaaagaacgctattcttaaatgtatccgtagtcaagctttaatataaattggggtaata 19365508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 9537881 - 9537973
Alignment:
Q  124 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgt 215  Q
    ||||||||||||||| ||| |||||||||||  ||| | |||||||  |||||||||| ||||||||| |  |||||| || |||||||||||    
T  9537881 ttacattaacataaagaacgctattcttaaatgtatatgtagtcaatatttaatataatttgggataacaataaaacgcatagactattatgt 9537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 23846767 - 23846700
Alignment:
Q  126 acattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    ||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23846767 acatttacataaagaacactattcttaaaagtatctgtagtcaaactttaatataaattgggataata 23846700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 20736726 - 20736604
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || |||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||  || ||||||||||  ||| |||   ||    
T  20736726 tgacttaatcatgagattacattaacataaagaacattattcttaaatgtatctgtagtcaagctttaataagaactgggataataataaagcgtcgaga 20736627  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  20736626 ctattatgtatgtagactgatga 20736604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 21994492 - 21994614
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||  |||| |||||| | |||||||||||||||| ||||||  ||| || |  ||    
T  21994492 tgacttaatcatgagattacattaatataaagaacactattcttaaatgtatccatagtcgagctttaatataaattggaataataataaagcgcaaaga 21994591  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||| | |||||||||||||    
T  21994592 ctattatatatgtagactgatga 21994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 4073480 - 4073595
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||||   ||| |||| ||||||||||| ||||  |||||||||||||||||||||  ||||||||  ||||||||  ||    
T  4073480 tgacttaatcatgagattacattaatggaaagaacattattcttaaaagtatccgtagtcaaactttaatataaatcaggataataataaaacgtagaga 4073579  T
Q  207 ctattatgtgtgtaga 222  Q
    ||||||||| ||||||    
T  4073580 ctattatgtttgtaga 4073595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 8612820 - 8612941
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  8612820 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 8612918  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  8612919 ctattatgtatgtagactgatga 8612941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 22560533 - 22560460
Alignment:
Q  156 tatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatga 229  Q
    |||| |||||||| |||||||||||||||||||||||  ||| || |  ||||||||||  ||||||| |||||    
T  22560533 tatccatagtcaagctttaatataaattgggataataataaagcgcagagactattatgcatgtagaccgatga 22560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 13343 - 13225
Alignment:
Q  112 ttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 210  Q
    ||||| || |||||||||||||||||||| || ||||||||||  |||| |||||||| ||||||||| |||||||||||||  ||| |||   ||||||    
T  13343 ttaatcatgagattacattaacataaaaaacagtattcttaaatgtatccatagtcaagctttaatattaattgggataataataaagcgtcgagactat 13244  T
Q  211 tatgtgtgtagactgatga 229  Q
    ||||| ||||||| |||||    
T  13243 tatgtatgtagaccgatga 13225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 8636 - 8758
Alignment:
Q  109 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 207  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||| | |||||||  |||||||||||||| |||| ||  ||| ||||  |||    
T  8636 gacttaatcatgagattacattaacataaagaacactattcttaaaagtatttgtagtcaagttttaatataaattgagatagtaataaagcgtagagac 8735  T
Q  208 tattatgtgtgtagactgatgat 230  Q
    || ||||| |||||| |||||||    
T  8736 taatatgtatgtagattgatgat 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 3587813 - 3587935
Alignment:
Q  108 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||| |||||||||||| |  ||||||||||   |||||||||||| |||||||||||||||||||||||  ||| ||||  ||    
T  3587813 tgacttaatcatgagattactttaacataaaaaacgttattcttaaatgaatctatagtcaagctttaatataaattgggataataataaagcgtagaga 3587912  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| | ||||| |||||    
T  3587913 ctattatgtatatagaccgatga 3587935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 15170428 - 15170307
Alignment:
Q  109 gacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatata--aattgggataatataaaaacgtattg 205  Q
    |||||||| || |||||||||||||||||||| |  |||||||||| |||| | ||||||| ||||||||||  |||||||||||||  ||| ||||  |    
T  15170428 gacttaatcatgagattacattaacataaaaaacgttattcttaaatatatttgtagtcaagctttaatatataaattgggataataataaagcgtagag 15170329  T
Q  206 actattatgtgtgtagactgat 227  Q
    |||||||| | |||||||||||    
T  15170328 actattatatatgtagactgat 15170307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 19393822 - 19393700
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || |||||||||||||||||| ||  |||||||||||  ||||| ||||||| ||||||||| | ||||||||||   ||| |||   ||    
T  19393822 tgacttaatcatgagattacattaacataaagaatgctattcttaaatgtatctgtagtcaagctttaatatgagttgggataattataaagcgtcgaga 19393723  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||| ||||    
T  19393722 ctattatgtatgtagactaatga 19393700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 28130465 - 28130587
Alignment:
Q  108 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||||| | |||||||||||  ||||| ||||||| ||||||||| |||  ||||||||  ||| |||   ||    
T  28130465 tgacttaatcatgagattacattatcataaaaaacgctattcttaaatgtatctgtagtcaagctttaatatgaataaggataataataaagcgtcgaga 28130564  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||  |||||||||||||    
T  28130565 ctattatgcatgtagactgatga 28130587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 18259522 - 18259437
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    ||||||||| || ||||||||||| |||||| |||| ||||||||||  |||| |||||||| ||||||||| |||| ||||||||    
T  18259522 tgacttaatcatgagattacattatcataaagaacattattcttaaatgtatccatagtcaagctttaatatgaattaggataata 18259437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 47167257 - 47167135
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    |||||| || || ||||||||||| |||||| |||  ||||||||||  ||| | ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  47167257 tgactttatcatgagattacattatcataaagaacgttattcttaaatgtatttgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 47167158  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  47167157 ctattatgtatgtagactgatga 47167135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 2935935 - 2936020
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||||  ||||||| ||||||||| ||||| |||||||    
T  2935935 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatccgtagtcaagctttaatatgaattgcgataata 2936020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 19388469 - 19388546
Alignment:
Q  121 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaa 197  Q
    ||||||||| || ||||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  19388469 agattacatcaatataaagaacactatttttaatagtatctgtagtcaagcttaaatataaattgggataataaaaaa 19388546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 31190825 - 31190756
Alignment:
Q  124 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    ||||||||||||||| |||| |||| ||||| |||||  ||||||| ||||| |||||||||||||||||    
T  31190825 ttacattaacataaataacattattattaaatatatccttagtcaagctttagtataaattgggataata 31190756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 15999886 - 16000008
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| | |||| ||| ||||| |||||  ||||  ||||||||||||||||| |||| ||||||||  ||| |||   ||    
T  15999886 tgacttaatcatgagattacattaccttaaagaacgctattattaaatgtatccttagtcaaactttaatatgaattaggataataataaagcgtcgaga 15999985  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    || |||||| || ||||||||||    
T  15999986 cttttatgtatgcagactgatga 16000008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 24443724 - 24443603
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| |  |||||||||||||||||| |||  ||||||||||  ||||  ||| ||| ||||||||||||| ||||| |||  |||  |||  ||    
T  24443724 tgacttaatcacgagattacattaacataaagaacgatattcttaaatgtatccgtagccaagctttaatataaat-gggatgataacaaagtgtaaaga 24443626  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  24443625 ctattatgtatgtagactgatga 24443603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 15526658 - 15526777
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||   || | ||||||| |||||||||||| || |||||||  ||| ||||  ||    
T  15526658 tgacttaatcatgagattacattaacataaagaacactattcttaaatgcatatgtagtcaagctttaatataaa-tgagataataataaagcgtagaga 15526756  T
Q  207 ctattatgtgtgtagactgat 227  Q
    ||||||||| |||||||||||    
T  15526757 ctattatgtttgtagactgat 15526777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 11787491 - 11787611
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| |||  ||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  11787491 tgacttaatcatgagattacattatcataaagaacgttattcttaaatgtatctgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 11787590  T
Q  207 ctattatgtgtgtagactgat 227  Q
    ||||||||| ||| |||||||    
T  11787591 ctattatgtatgttgactgat 11787611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 25979126 - 25979006
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  25979126 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 25979027  T
Q  207 ctattatgtgtgtagactgat 227  Q
    ||||||||| ||| |||||||    
T  25979026 ctattatgtatgttgactgat 25979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 28088120 - 28088192
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatat 178  Q
    ||||||||| || ||||||||||| |||||| ||||||||||||||| | |||  |||||||| |||||||||    
T  28088120 tgacttaatcatgagattacattatcataaagaacactattcttaaatagatccgtagtcaaagctttaatat 28088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 20100641 - 20100518
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||||| |||| |||  ||||||||||  |||   |||| ||||||||||||||||||||||||||  ||| |||   ||    
T  20100641 tgacttaatcatgagattacattaacgtaaataacgttattcttaaatgtattcgtagttaaactttaatataaattgggataataataaagcgtcacga 20100542  T
Q  207 ctattatgtgtgtagactgatgat 230  Q
    ||||||||| ||||||||||||||    
T  20100541 ctattatgtatgtagactgatgat 20100518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 7865831 - 7865710
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  7865831 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 7865733  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  7865732 ctattatgtatgtagactgatga 7865710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 12765391 - 12765270
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12765391 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12765293  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  12765292 ctattatgtatgtagactgatga 12765270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 5097555 - 5097677
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||| | |||||||  |||||||| |||| ||||||||  ||| |||   ||    
T  5097555 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatttgtagtcaagttttaatatgaattaggataataataaagcgtcgaga 5097654  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  5097655 ctattatgtatgtagactgatga 5097677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 12704275 - 12704154
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  12704275 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 12704177  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||| ||||| |||||||||||||    
T  12704176 ctactatgtatgtagactgatga 12704154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 39535368 - 39535490
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| | |||| |||  ||||||||||  ||||  || |||||||||||||| |||||||||||||  ||| |||   ||    
T  39535368 tgacttaatcatgagattacattaccttaaagaacgatattcttaaatgtatccgtactcaaactttaatatgaattgggataataataaagcgtcaaga 39535467  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||||||||||    
T  39535468 ctattatgtatgtagactgatga 39535490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 9812134 - 9812013
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| ||||||||| |||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  9812134 tgacttaatcatgagattacattatcataaagaacactattattaaatgtatccgtagtcaagctttaatat-aattaggataataataaagcgtcgaga 9812036  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||| ||||| |||||||||||||    
T  9812035 ctactatgtatgtagactgatga 9812013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 31652181 - 31652060
Alignment:
Q  109 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 207  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||| | || || ||| | ||||| ||||||||| || ||||  ||||| ||  |||    
T  31652181 gacttaatcgtaagattacattaacataaagaatattattcttaaaagtttccatggtcgagctttattataaattgagacaatagtaaaacatagagac 31652082  T
Q  208 tattatgtgtgtagactgatga 229  Q
    || ||||| |||||||||||||    
T  31652081 tactatgtatgtagactgatga 31652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 26245006 - 26245129
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| ||   ||||||||||  ||||| || |||| ||||||||| |||  ||||||||  ||| |||   ||    
T  26245006 tgacttaatcatgagattacattatcataaagaatgttattcttaaatgtatctgtaatcaagctttaatatgaataaggataataataaagcgtcgaga 26245105  T
Q  207 ctattatgtgtgtagactgatgat 230  Q
    ||||||||| ||||||||||||||    
T  26245106 ctattatgtatgtagactgatgat 26245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 26130091 - 26130006
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    |||||||||  ||| ||||| ||||||| || ||| || ||||||||  ||||  ||||||| |||||||||||||||||||||||    
T  26130091 tgacttaatcctaatattactttaacattaagaacgctcttcttaaatgtatccgtagtcaagctttaatataaattgggataata 26130006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 83412 - 83291
Alignment:
Q  109 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 207  Q
    ||||||||| | |||||| ||| ||| ||| || ||||||||||||| ||||  ||||| || |||||||||||||| |||||||  |||  |||| |||    
T  83412 gacttaattgtgagattaaattcacacaaagaatactattcttaaaagtatccgtagtcgaaatttaatataaattgagataataataaagtgtatagac 83313  T
Q  208 tattatgtgtgtagactgatga 229  Q
    |||||||| |||||||||||||    
T  83312 tattatgtatgtagactgatga 83291  T

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Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 40386 - 40265
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||| ||||||||| |||| ||| |||||||||||  |||| |||||||| ||||||||||||||| |||||||  ||| ||    ||    
T  40386 tgacttaatcatgagaatacattaacgtaaagaacgctattcttaaatgtatccatagtcaagctttaatataaattgagataataataaagcgccgaga 40287  T
Q  207 ctattatgtgtgtagactgatg 228  Q
    ||||||||| ||||||||||||    
T  40286 ctattatgtatgtagactgatg 40265  T

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Target: scaffold0376 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 11927 - 11806
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||    |    
T  11927 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatctgtagtcaatctttaatat-aattaggataataataaagcgtcgaaa 11829  T
Q  207 ctattatgtgtgtagactgatga 229  Q
    ||||||||| |||||| ||||||    
T  11828 ctattatgtatgtagattgatga 11806  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 45346 - 45226
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  45346 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatattaattaggataataataaagcgtcgaga 45247  T
Q  207 ctattatgtgtgtagactgat 227  Q
    ||||||||| ||| |||||||    
T  45246 ctattatgtatgttgactgat 45226  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 53682 - 53791
Alignment:
Q  121 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 219  Q
    |||||||||||||||||| |||||||||||||||  ||||  || |||| ||||||||| |||| ||||||||  |||  ||   ||||||||||| |||    
T  53682 agattacattaacataaagaacactattcttaaatgtatccgtattcaagctttaatatgaattaggataataataaagtgtcaagactattatgtatgt 53781  T
Q  220 agactgatga 229  Q
    ||| ||||||    
T  53782 agattgatga 53791  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 8727568 - 8727653
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 192  Q
    ||||| ||| |||||||||| |||||||||| |||  |||||| |||  ||||| ||||||||||||||||| ||||| |||||||    
T  8727568 tgactaaatcataagattactttaacataaagaacgttattctgaaatctatctgtagtcaaactttaatatgaattgagataata 8727653  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 633840 - 633960
Alignment:
Q  110 acttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgact 208  Q
    ||||||| || |||||| |||| |||||| |||| |||| |||||  ||||  ||||||| ||||||||| |||  ||||||||  ||| |||   ||||    
T  633840 acttaatcatgagattaaattatcataaagaacattatttttaaatgtatccgtagtcaagctttaatatgaataaggataataacaaagcgtcgagact 633939  T
Q  209 attatgtgtgtagactgatga 229  Q
    ||||||| |||||||||||||    
T  633940 attatgtatgtagactgatga 633960  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 18835254 - 18835374
Alignment:
Q  108 tgacttaattataagattacattaacat-aaaaacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 206  Q
    ||||||||| || ||||||||||||||| ||||||  |||||||||| |||||| ||||| | |||||||||  ||||  ||||||  ||| | |   ||    
T  18835254 tgacttaatcatgagattacattaacataaaaaacgttattcttaaatatatctgtagtccagctttaatatggattgaaataataataaagcatcgaga 18835353  T
Q  207 ctattatgtgtgtagactgat 227  Q
    ||||||||| |||||||||||    
T  18835354 ctattatgtatgtagactgat 18835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 22659894 - 22659770
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaat-tgggataatataaaaacgtatt 204  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  22659894 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcaa 22659795  T
Q  205 gactattatgtgtgtagactgatga 229  Q
    ||||||||||| |||||||||||||    
T  22659794 gactattatgtatgtagactgatga 22659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 20539798 - 20539672
Alignment:
Q  108 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata-taaaaa--cgtat 203  Q
    ||||||||| ||  ||||||||||||||||| |||  |||||||||| | || | |||| || ||||||| ||||||||||||||| ||| ||  || ||    
T  20539798 tgacttaatcatgtgattacattaacataaagaacgttattcttaaatacatttgtagtaaagctttaatgtaaattgggataataataataaagcgcat 20539699  T
Q  204 tgactattatgtgtgtagactgatgat 230  Q
     ||| ||||||| ||||||||||||||    
T  20539698 agacgattatgtatgtagactgatgat 20539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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