View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_low_17 (Length: 211)
Name: NF5543_low_17
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 31167891 - 31168058
Alignment:
| Q |
23 |
acctcattatcaccataacatttaccaatggcttctaatttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaatatccaaatcagaa |
121 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31167891 |
acctcactatcaccataacatttaccaatggcttctaatttaaacccaaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaa |
31167990 |
T |
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| Q |
122 |
aacttataacaatttcatttcactcaaagatccaaatgttgttctagaactaacaagttggaatgctt |
189 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31167991 |
aacctataacaatttcatttcactcaaagatccaaatgttgttctagatctaacaagttggaatgctt |
31168058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 53268712 - 53268879
Alignment:
| Q |
23 |
acctcattatcaccataacatttaccaatggcttctaatttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaatatccaaatcagaa |
121 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53268712 |
acctcactatcaccataacatttaccaatggcttctaatttaaacccaaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaa |
53268811 |
T |
|
| Q |
122 |
aacttataacaatttcatttcactcaaagatccaaatgttgttctagaactaacaagttggaatgctt |
189 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
53268812 |
aacctataacaatttcatttcactcaaagatccaaatgttgctctagatctaacaagttgaaatgctt |
53268879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 49162059 - 49162226
Alignment:
| Q |
23 |
acctcattatcaccataacatttaccaatggcttctaatttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaatatccaaatcagaa |
121 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49162059 |
acctcactatcaccataacatttaccaatggcttctaatttaaactcaaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaa |
49162158 |
T |
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| Q |
122 |
aacttataacaatttcatttcactcaaagatccaaatgttgttctagaactaacaagttggaatgctt |
189 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |
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| T |
49162159 |
aacctataacaatttcatttcactcaaagatccaattgttgttctagatctaacaagttcgaatgctt |
49162226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 23633828 - 23633715
Alignment:
| Q |
44 |
ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatttca |
143 |
Q |
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|||||||||||||||| | ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| | ||||||| |
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| T |
23633828 |
ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaactacatttca |
23633729 |
T |
|
| Q |
144 |
ctcaaagatccaaa |
157 |
Q |
| |
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|||||||||||||| |
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| T |
23633728 |
ctcaaagatccaaa |
23633715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 39147702 - 39147590
Alignment:
| Q |
44 |
ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatttca |
143 |
Q |
| |
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|||||||||||||||| | ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| | ||||||| |
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| T |
39147702 |
ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaactacatttca |
39147603 |
T |
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| Q |
144 |
ctcaaagatccaaa |
157 |
Q |
| |
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| |||||||||||| |
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| T |
39147602 |
c-caaagatccaaa |
39147590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 6901016 - 6901128
Alignment:
| Q |
44 |
ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatttca |
143 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| | |||||| |
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| T |
6901016 |
ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaa-ctaatttca |
6901114 |
T |
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| Q |
144 |
ctcaaagatccaaa |
157 |
Q |
| |
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|||||||||||||| |
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| T |
6901115 |
ctcaaagatccaaa |
6901128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 6608805 - 6608874
Alignment:
| Q |
87 |
ttaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatttcactcaaagatccaa |
156 |
Q |
| |
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||||||||||| || ||||||||||||| ||| ||||||||||| | | |||||||||||||||||||| |
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| T |
6608805 |
ttaatcatcattaaactcaaatatccaagtcataaaacttataatagctacatttcactcaaagatccaa |
6608874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 1619639 - 1619569
Alignment:
| Q |
86 |
attaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatttcactcaaagatccaa |
156 |
Q |
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|||||||||||| || ||||||||||||| ||| ||||||||||| | | ||||||| ||||||||||| |
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| T |
1619639 |
attaatcatcattaaactcaaatatccaagtcataaaacttataatagctacatttcatccaaagatccaa |
1619569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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