View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_low_3 (Length: 612)
Name: NF5543_low_3
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 197 - 594
Target Start/End: Complemental strand, 5795178 - 5794780
Alignment:
| Q |
197 |
catggtttggtttgaattggttggactcaaaattaaaaacactcccattcattttgtaataggctctgtgtatctagccaaacataaagctatagtgcca |
296 |
Q |
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| T |
5795178 |
catggtttggtttggattggttggactcaaaattaaaaacactcccattcattttgtaataggctctgtgtatctagccaaacataaagctatagtgcca |
5795079 |
T |
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| Q |
297 |
aacctaaacctatagtgtatatgttctcataaaagatattgtctttctaacgtatttaataaaatatatcgaaatacatattttatgcatcctcgcttag |
396 |
Q |
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| T |
5795078 |
aacctaaacctatagtgtatatgttctcataaaagatattgtctttctaacgtatttaataaaatatatcgaaatacatattttatgcatcctcgcttat |
5794979 |
T |
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| Q |
397 |
attatgtttattggaaacgtatttaagaccatttagtgttttttattttatgcaatgaagttaagaagttcgttcacgagattgagacatattttagccc |
496 |
Q |
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| T |
5794978 |
agtatgtttatcggaaacgtatttaagcccatttagtgttttttattttatggaatgaagttaagacgttcgttcacgagattgagacatattttaggcc |
5794879 |
T |
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| Q |
497 |
actatttcttgcatttatcacattctttata-cannnnnnngtaaccttagaatggctagatctacgtcattatttctcctcttcttgccacaagaatc |
594 |
Q |
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| T |
5794878 |
actatttcttgcattaatcacattttttataccttttttttgtaaccttagaatggctagatctacttcattatttctcctcttcttgccacaagaatc |
5794780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 5795458 - 5795349
Alignment:
| Q |
14 |
cataggtaccgagcaagacataaaagccaaaatgattctctcaattaattttggtatttgtaaaatcactatggcagtaaagggttacatagttacgggt |
113 |
Q |
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| T |
5795458 |
cataggtaccgagcaagacataaaagccaaaatgattctctcaattaattttggtatttgtaaaatcactatggcagtaaagggttacacagttaggggt |
5795359 |
T |
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| Q |
114 |
ctattgctta |
123 |
Q |
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|||||||||| |
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| T |
5795358 |
ctattgctta |
5795349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 5697142 - 5697062
Alignment:
| Q |
27 |
caagacataaaagccaaaatgattctctcaattaattttggtatttgtaaaatcactatggcagtaaagggttacatagtt |
107 |
Q |
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| T |
5697142 |
caagacataaaatccaaaatgattgtctcaattaattttggaatttgtaaaatcattatggcagtaaagggttacacagtt |
5697062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 5696898 - 5696848
Alignment:
| Q |
248 |
ttttgtaataggctctgtgtatctagccaaacataaagctatagtgccaaa |
298 |
Q |
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| T |
5696898 |
ttttgtaataagctcggcgtatatagccaaacataaaggtatagtgccaaa |
5696848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 9977783 - 9977740
Alignment:
| Q |
317 |
atgttctcataaaagatattgtctttctaacgtatttaataaaa |
360 |
Q |
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| T |
9977783 |
atgttctcataaaagattttgtctctcaaacgtatttaataaaa |
9977740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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