View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_low_4 (Length: 465)
Name: NF5543_low_4
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 9254943 - 9255405
Alignment:
| Q |
1 |
tattccaccaatcaaaccagctaagctagacaaaaatggaattgcaactcctatgaagaagcacaaaaacccgaagaagactcggaaaattactcggagc |
100 |
Q |
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| T |
9254943 |
tattcctccaatcaaaccagctaagctagacaaaaatggaattgcaactcctatgaagaagcacaaaaacccgaagaagactcggaaaattactcgaagc |
9255042 |
T |
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| Q |
101 |
caccaagggcacggtttcttccatctagtggtgtatactgattccatgtcatcgaaagccggcatgccatatatttgaaatgaacacaaaccatttacta |
200 |
Q |
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| T |
9255043 |
caccacgggcacggtttcttccatctagtggtgtatactgattccatgtcatcgaaagccggcatgccatatatttgaaatgaacacaaaccatttacta |
9255142 |
T |
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| Q |
201 |
ctacgaaaaagctggtcattccaagtacaaattttgatacgtcttgagaatgaaattggtatagggcagtgagcattcctccgtttgcaggaatctgtat |
300 |
Q |
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| T |
9255143 |
ctacgaaaaagctggtcattccaagtacaaattttgatacgtcttgagaatgaaattggtatagggccgtaagcattcctccgtttgcaggaatctgtat |
9255242 |
T |
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| Q |
301 |
atttcaaatcaatggtttgtgattagttgacggtgtaaatttatactaaaattgcatcaaaactaaattcaaattaaaacaatatggtactagtagtata |
400 |
Q |
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| T |
9255243 |
atttgaagtcaatggtttgtgattagttgacggtgtaaatttataataaaattgcatcaaaactaaattcaaattaaaacaatatggtac---tagtata |
9255339 |
T |
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| Q |
401 |
ccataag-caagtcataatataattaattagttggctaattttactctctttagttctaagcaatt |
465 |
Q |
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| T |
9255340 |
ccataagacaagtcataatataattaattagttggctaattttactctctttagttctaagtaatt |
9255405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 9238839 - 9239135
Alignment:
| Q |
8 |
ccaatcaaaccagctaagctagacaaaaatggaattgcaactcctatgaagaagcacaaaaacccgaagaagactcggaaaattactcggagccaccaag |
107 |
Q |
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| T |
9238839 |
ccaattaaaccagccaagctagccaaaaatggtgttgccactcctatgaagaaggataaaaatcctgagaagattcgaatacttgaccggagccaccatg |
9238938 |
T |
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| Q |
108 |
ggcacggtttcttccatctagtggtgtatactgattccatgtcatcgaaagccggcatgccatatatttgaaatgaacacaaaccatttactactacgaa |
207 |
Q |
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| T |
9238939 |
gacatggcttattcatttttgttgtgtattttgattccatgtcatcgaaaattggcatgccgtagatttggaatgaacacaaacaattcactactacaaa |
9239038 |
T |
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| Q |
208 |
aaagctggtcattccaagtacaaattttgatacgtcttgagaatgaaattggtatagggcagtgagcattcctccgtttgcaggaatctgtatattt |
304 |
Q |
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| T |
9239039 |
gaagctggttaatccaagcacaaatcttgatatgtcatgggaatggaatttgtatagtgctgtgagcattcctccattttcaggaatctgtacattt |
9239135 |
T |
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