View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_low_6 (Length: 438)
Name: NF5543_low_6
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 180 - 433
Target Start/End: Complemental strand, 14028137 - 14027878
Alignment:
| Q |
180 |
gttcgtgttatttttgtaagactcttgttcaacccttgtactacttgagctaggggtacccattttatggcatttaaattttattttgcaatgttaaaaa |
279 |
Q |
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| T |
14028137 |
gttcgtgttatttttgtaagactcttgttcaacccttgtactatttgagctaggggtaccgtttttatggcatttaaattttattttgccttgttaaaaa |
14028038 |
T |
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| Q |
280 |
tcaaaataatgtatatcgtataacattaatcaaaagaaaaagattaccaaggaaaaatcgacgaatcatatgattattaattatggttgattatatttct |
379 |
Q |
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| T |
14028037 |
tcaaaatactgtatatcgtataacataaatcaaaagaaaaagattacaaaggaaaaatcgacgaatcatataattattaattatggttgattatatttct |
14027938 |
T |
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| Q |
380 |
tttg-----ttttttatgaaagactc-taaagtcttctacgtttttccccctatgcttct |
433 |
Q |
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| T |
14027937 |
tttgttttgttttttatgaaagactcttaaagtcttctacgtttttccccttatggttct |
14027878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 14113345 - 14113308
Alignment:
| Q |
379 |
ttttgttttttatgaaagactctaaagtcttctacgtt |
416 |
Q |
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| T |
14113345 |
ttttgttttttatgaaagactctaaagtcttctacgtt |
14113308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 14113604 - 14113547
Alignment:
| Q |
51 |
ttattatggttttggtggttgaaagttaagtatctttgtttaacttttgattttcata |
108 |
Q |
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| T |
14113604 |
ttattattgttccggtggttgaaaggtaagtatctttgtgttacttttgattttcata |
14113547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 14107185 - 14107148
Alignment:
| Q |
379 |
ttttgttttttatgaaagactctaaagtcttctacgtt |
416 |
Q |
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| T |
14107185 |
ttttgttttttatgaaagactataaagtcttcaacgtt |
14107148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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