View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_low_7 (Length: 384)
Name: NF5543_low_7
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 37336496 - 37336853
Alignment:
| Q |
19 |
cttagatatacactgtcatgaacttccatactttacaaagaacaaaattctggattaattttaaaatcatcgatatgaagaagattcagattgatctcca |
118 |
Q |
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| T |
37336496 |
cttagatatacactgtcatgaacttccatactttacaaagaacaaaattctggattatttttaaaatcatcgatatgaagaagattcagattgatctcca |
37336595 |
T |
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| Q |
119 |
taaagtaaactaaagtcaaatgctaaaaacagcaagcaccnnnnnnn-attgaaaataataacagcaagtaatttggcaaatagtaaatcgacatggact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
37336596 |
taaagtaaactaaagtcaaatgctaaaaacagcaagcaccttttttttattgaaaataataacagcaagtattttggcaaatagtacatcgacatggact |
37336695 |
T |
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| Q |
218 |
ttaattcctcttttttctatagatgtatat--tgaaagtgaaatgttacaaattgcacatcttcattttactcacatgactcacacatcttacatcgtta |
315 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37336696 |
ttaattcctcttttttctatagatgtatatattcaaagtgaaatgttacaaattgcacatcttcattttactcacatgactcacacatcttacatcgtta |
37336795 |
T |
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| Q |
316 |
ccattgatttccccgactccaattacaaacaaacaaccataaacatctcatagtataa |
373 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37336796 |
ccattgatttccccgacttcaattacaaacaaacaaccataaacatctcatagtataa |
37336853 |
T |
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