View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5543_low_9 (Length: 347)
Name: NF5543_low_9
Description: NF5543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5543_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 1914488 - 1914160
Alignment:
| Q |
1 |
ttatgacatgttcataagttgtttccagtttgttttggtaaactctacatgatagcttaggaaaaacaacttataacttataaaaatagtttgtttgcgt |
100 |
Q |
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| T |
1914488 |
ttatgacatgttcataagttgtttccagtttgttttggtaaactctacatgatagcttacgaaaaacaacttataacttataaaaatagtttgtttacgt |
1914389 |
T |
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| Q |
101 |
acctcaaattcaccaaatgcttgtaacctctgaagaatctgctccataggagctgaagaaacctgcaaatgaaaaacagagcaaccgaatcatatacatt |
200 |
Q |
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| T |
1914388 |
acctcaaattcaccaaatgcttgtaacctctgaagaatctgctccataggagctgaagaaacctgcaaatgaaaaacagagcaacagaatcatatacatt |
1914289 |
T |
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| Q |
201 |
cataacaacacctctatgttttcaacttaaaactaaaccagaaaccaaagaatataaaatctggatccaacactaaaaacctaagaagcgctgacacaga |
300 |
Q |
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| T |
1914288 |
cataacaacgcctctatgttttcaacttaaaactaaaccagaaaccaaagaatataaaatctggatccaacactaaaaacctaagaagcgctgacacaga |
1914189 |
T |
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| Q |
301 |
cactcacggacaccacgacattgacaccg |
329 |
Q |
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| T |
1914188 |
cactcacggacaccacaacattgacaccg |
1914160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1056126 - 1056183
Alignment:
| Q |
1 |
ttatgacatgttcataagttgtttccagtttgttttggtaaactctacatgatagctt |
58 |
Q |
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| T |
1056126 |
ttatgacatgttcattagttgttttcagcttgttttcataagctctacatgagagctt |
1056183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 779058 - 779122
Alignment:
| Q |
1 |
ttatgacatgttcataagttgtttccagtttgttttggtaaactctacatgatagcttaggaaaa |
65 |
Q |
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|||||||||||||||||||||||| || || |||||||| ||||| || ||||| ||| ||||| |
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| T |
779058 |
ttatgacatgttcataagttgttttcatcttattttggtacactctccaagatagtttatgaaaa |
779122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24460404 - 24460468
Alignment:
| Q |
1 |
ttatgacatgttcataagttgtttccagtttgttttggtaaactctacatgatagcttaggaaaa |
65 |
Q |
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|||||||||||||||||| ||||||||| || |||| |||| |||| | ||||||||| ||||| |
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| T |
24460404 |
ttatgacatgttcataagctgtttccagcttatttttgtaagctctcaaggatagcttatgaaaa |
24460468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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