View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544-Insertion-11 (Length: 138)
Name: NF5544-Insertion-11
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544-Insertion-11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 17782271 - 17782401
Alignment:
| Q |
8 |
tggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggt |
107 |
Q |
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| T |
17782271 |
tggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagctgcgaatcatcataaagtgattgaagagcgtagggt |
17782370 |
T |
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| Q |
108 |
tcaagctcttgtaacgtatttaccacgatac |
138 |
Q |
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| T |
17782371 |
tcaagctcttgtaacgtatttaccacgatac |
17782401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 20563453 - 20563575
Alignment:
| Q |
8 |
tggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggt |
107 |
Q |
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| T |
20563453 |
tggatcccattggaccggtccaacaagatcaagaaccggtccaattgggtaaacaggtggaagctgcaaatcattgtgaagtgattcaagagcgtatggt |
20563552 |
T |
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| Q |
108 |
tcaagctcttgtaacgtatttac |
130 |
Q |
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| T |
20563553 |
tcaagctcttttaatgtatttac |
20563575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 20582630 - 20582746
Alignment:
| Q |
22 |
ccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggttcaagctcttgtaa |
121 |
Q |
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| T |
20582630 |
ccggtccaacaaggtcgagaaccggtccaattgggtaaacaggtggaagctgcaaatccttgtaaagtgattgtagagcataaggttcaagctcttgtaa |
20582729 |
T |
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| Q |
122 |
cgtatttaccacgatac |
138 |
Q |
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| T |
20582730 |
tgtatttaccacaatac |
20582746 |
T |
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