View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544-Insertion-2 (Length: 885)
Name: NF5544-Insertion-2
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 403 - 681
Target Start/End: Original strand, 13728657 - 13728935
Alignment:
| Q |
403 |
atggcataaaactatgaaactccttgatgagggacctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtcccatcctttatcagc |
502 |
Q |
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| T |
13728657 |
atggtataaaattatgaaactccttgatgagggacctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtcccaacctttatcagc |
13728756 |
T |
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| Q |
503 |
agctaaaccaatagcggtttgggtttgagtgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaattaagatttccctttaagatt |
602 |
Q |
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| T |
13728757 |
agctaaaccaatagcggtttgggtttgagcgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaattaagatttccctttaagatt |
13728856 |
T |
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| Q |
603 |
tcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaacttttaaattata |
681 |
Q |
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| T |
13728857 |
tcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaaattttaaattata |
13728935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 673 - 885
Target Start/End: Original strand, 13729311 - 13729523
Alignment:
| Q |
673 |
taaattatacttaagatttcattttgattgggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
772 |
Q |
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| T |
13729311 |
taaattatacttaagatttcattttgatttggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
13729410 |
T |
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| Q |
773 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
872 |
Q |
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| T |
13729411 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
13729510 |
T |
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| Q |
873 |
cggatgtttagtt |
885 |
Q |
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| T |
13729511 |
cggatgtttagtt |
13729523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 182 - 404
Target Start/End: Original strand, 13726980 - 13727204
Alignment:
| Q |
182 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
280 |
Q |
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| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
|
| Q |
281 |
ttctcaaaaat-atggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataaacttcacgttaaagcta |
379 |
Q |
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||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggtcgccgtagcaagactatgagcaagcgtgtttgtttgttgcctaataaacttcacgttaaagcta |
13727179 |
T |
|
| Q |
380 |
attcaatattaatagaagatataat |
404 |
Q |
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| T |
13727180 |
attcaatattaatagaagatataat |
13727204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 13726555 - 13726690
Alignment:
| Q |
7 |
atgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatccattgaacaaaaaagattgcaaagcatcaattgattgtgacctttcca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
13726555 |
atgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatgcattgaacaaaaaagatagcaaagcatcaagtgattgtgacctttcca |
13726654 |
T |
|
| Q |
107 |
tgtaggatttagaccttttcctaatgtggtgtggca |
142 |
Q |
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| T |
13726655 |
tgtaggattttgaccttttcctaatgtggtgtggca |
13726690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 642 - 693
Target Start/End: Original strand, 13728852 - 13728903
Alignment:
| Q |
642 |
agatttcaatgccaaaaattgttctaacttttaaattatacttaagatttca |
693 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
13728852 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttca |
13728903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 49525056 - 49525120
Alignment:
| Q |
263 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaag |
327 |
Q |
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||||||||||||||| || |||||||||||||| ||| || |||||||||| |||| ||||||| |
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| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaag |
49525120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 8670176 - 8670279
Alignment:
| Q |
263 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataa |
362 |
Q |
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|||||||||||| || || ||||||| ||| || ||| || ||||||||||| |||| ||| |||| | ||||||| ||||||||||| |||||| || |
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| T |
8670176 |
tcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaa |
8670275 |
T |
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| Q |
363 |
actt |
366 |
Q |
| |
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|||| |
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| T |
8670276 |
actt |
8670279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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