View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5544-Insertion-3 (Length: 660)

Name: NF5544-Insertion-3
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5544-Insertion-3
NF5544-Insertion-3
[»] chr7 (8 HSPs)
chr7 (8-628)||(7753719-7754325)
chr7 (468-585)||(38603004-38603122)
chr7 (516-585)||(19267369-19267438)
chr7 (467-571)||(30969763-30969868)
chr7 (468-584)||(37757468-37757585)
chr7 (468-584)||(37763216-37763333)
chr7 (518-566)||(28984151-28984199)
chr7 (516-584)||(29695175-29695243)
[»] chr6 (3 HSPs)
chr6 (465-585)||(14536115-14536236)
chr6 (465-588)||(14518614-14518736)
chr6 (514-588)||(7479007-7479085)
[»] chr1 (4 HSPs)
chr1 (465-585)||(51672456-51672576)
chr1 (516-585)||(8296176-8296245)
chr1 (485-566)||(18280457-18280539)
chr1 (517-584)||(36554247-36554311)
[»] chr5 (2 HSPs)
chr5 (467-584)||(18345696-18345814)
chr5 (465-573)||(11600902-11601010)
[»] chr3 (4 HSPs)
chr3 (520-585)||(41417143-41417208)
chr3 (466-545)||(26669181-26669261)
chr3 (514-584)||(8005056-8005127)
chr3 (439-546)||(49137563-49137671)
[»] chr4 (6 HSPs)
chr4 (457-585)||(29391159-29391284)
chr4 (516-571)||(23499438-23499493)
chr4 (465-509)||(8258904-8258948)
chr4 (465-509)||(8272322-8272366)
chr4 (517-585)||(9521880-9521948)
chr4 (517-561)||(36912767-36912811)
[»] chr8 (3 HSPs)
chr8 (516-572)||(39421523-39421579)
chr8 (539-585)||(7840408-7840453)
chr8 (539-588)||(13866183-13866232)
[»] chr2 (1 HSPs)
chr2 (539-585)||(1607793-1607839)


Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 628
Target Start/End: Original strand, 7753719 - 7754325
Alignment:
Q  8 attttaaaggtaacga-gagataaccaccaagtagaagtcaatttcaacttatacattttt-actctccacttatataaacacaaataaatataaaatta 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||                ||||    
T  7753719 attttaaaggtaacgatgagataaccaccaagtagaagtcaatttcaacttatacattttttactctctacttatataaa----------------atta 7753802  T
Q  106 atccatcgttgaacacaacttactctcaagattaaaaatcttaaaaatgattatgccggttattccaatttcaaatgcttataatctttcgtggcatagc 205  Q
    ||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7753803 atcaaaccttgaacacaacttactctcaagattaaaaatcttaaaa-tgattatgccggttattccaatttcaaatgcttataatctttcgtggtatagc 7753901  T
Q  206 aagtgtgtgttagaaaatgttcacttctaaagattgtgcgaaagttcaaagatatgtcgtcatatagttttttaaggttttatgacttcactctcatctg 305  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||    
T  7753902 aagtgtgtgttagaaaatgttcacttctaaagattgtgcgacagttcaaaggtatgtcgtcgtatagttttttaaggttttatgacttcaatctcatttg 7754001  T
Q  306 aaaaacacacgatggaacaacaaattttgatattaaaaggtaatgaggagataattaatcggtaaatagaagtcaatttcaacttattccttaggctcgc 405  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||    
T  7754002 aaaaacacacgatggaacaacaaattttgacattaaaaggtaatgaggagataattaatcattaaatagaagtcaatttcaacttattccataggctcgc 7754101  T
Q  406 ataagttaattttgaagttgttcctctatagtgaacaaatcattttttagcgtaaggtagacaatatcaattgttaattaacaaattaaatgttaatatt 505  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7754102 ataagttaattttgaagttgttcctctaaagtgaacaaatcattttttagcgtaaggtggacaatatcaattgttaattaacaaattaaatgttaatatt 7754201  T
Q  506 gtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagagaattttgttagatatatta 604  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7754202 gtagatacttaataataaatcacgagtgtgttacaataacaacccttgattttctcattttacacttaactcactttagaggattttgttagatatatta 7754301  T
Q  605 tgcctataaaacttgaaaacctct 628  Q
    ||||||||||||||||||||||||    
T  7754302 tgcctataaaacttgaaaacctct 7754325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 585
Target Start/End: Complemental strand, 38603122 - 38603004
Alignment:
Q  468 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 566  Q
    ||||||||  ||||||||| |||| ||| ||  ||||||||| ||| ||||||||||||| |||| ||||| |||||||| ||||||||||||   ||||    
T  38603122 aatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacattataacaaatcatgagtttgttaaaataacaacccttgattttcttgcttta 38603023  T
Q  567 cacttaactcactttagag 585  Q
    ||||| |||||||||||||    
T  38603022 cacttcactcactttagag 38603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 585
Target Start/End: Original strand, 19267369 - 19267438
Alignment:
Q  516 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagag 585  Q
    ||||||||||| |||| ||||| |||||||| |||||||||||||| ||||||||| |||||||||||||    
T  19267369 ataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagag 19267438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 467 - 571
Target Start/End: Complemental strand, 30969868 - 30969763
Alignment:
Q  467 caatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttt 565  Q
    |||||||||  |||||||||||||||||  ||| || |||||| ||  | ||||||||||| |||| |||||||||||||| |||||||||||||| |||    
T  30969868 caatatcaaccgttaattaacaaattaagggttgattttgtaggtatatcataacaaatcatgagtttgttacaataacaacccttgattttctcacttt 30969769  T
Q  566 acactt 571  Q
    ||||||    
T  30969768 acactt 30969763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 584
Target Start/End: Original strand, 37757468 - 37757585
Alignment:
Q  468 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 566  Q
    ||||||||| ||||||||| |||| ||| ||  ||||||||| ||| ||||||||| ||| |||| ||||| |||||||| | |||||||||||  ||||    
T  37757468 aatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgttaaaataacaacctttgattttctcgcttta 37757567  T
Q  567 cacttaactcactttaga 584  Q
    ||||| ||| ||||||||    
T  37757568 cacttcactaactttaga 37757585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 584
Target Start/End: Original strand, 37763216 - 37763333
Alignment:
Q  468 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 566  Q
    ||||||||| ||||||||| |||| ||| ||  ||||||||| ||| ||||||||| ||| |||| ||||| |||||||| | |||||||||||  ||||    
T  37763216 aatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgttaaaataacaacctttgattttctcgcttta 37763315  T
Q  567 cacttaactcactttaga 584  Q
    ||||| ||| ||||||||    
T  37763316 cacttcactaactttaga 37763333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 566
Target Start/End: Complemental strand, 28984199 - 28984151
Alignment:
Q  518 aacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 566  Q
    |||||||||||||| ||||| ||||| || |||||||||||||| ||||    
T  28984199 aacaaatcacgagtttgttataataataacccttgattttctcacttta 28984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 29695243 - 29695175
Alignment:
Q  516 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttaga 584  Q
    ||||||||||| |||| ||||| ||||||||| ||| |||||  ||||||||| || | ||||||||||    
T  29695243 ataacaaatcatgagtttgttataataacaattcttaatttttacattttacattttattcactttaga 29695175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 465 - 585
Target Start/End: Complemental strand, 14536236 - 14536115
Alignment:
Q  465 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 563  Q
    |||||||| ||||||||||||| |||||||| ||  ||||||||| ||| | |||||||||||||||| |||| ||||||||| | |||||||||||| |    
T  14536236 gacaatattaattgttaattaaaaaattaaaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctcact 14536137  T
Q  564 ttacacttaactcactttagag 585  Q
    |||||||| |||| ||||||||    
T  14536136 ttacacttcactcgctttagag 14536115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 465 - 588
Target Start/End: Complemental strand, 14518736 - 14518614
Alignment:
Q  465 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 563  Q
    ||||||||||| |||||||| | |||||||| |   ||||||||| ||| | ||||||||||| |||| | ||| ||||||||| ||||||||||||| |    
T  14518736 gacaatatcaactgttaatttaaaaattaaaggg--atattgtaggtacatcataacaaatcatgagtttcttataataacaattcttgattttctcact 14518639  T
Q  564 ttacacttaactcactttagagaat 588  Q
    |||||||| | ||||||||||||||    
T  14518638 ttacactttattcactttagagaat 14518614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 588
Target Start/End: Original strand, 7479007 - 7479085
Alignment:
Q  514 ttataacaaatcacgagtgtgttacaataacaa----tccttgattttctcattttacacttaactcactttagagaat 588  Q
    |||||||||||||||||| ||||| ||||||||    | ||||||||||||| ||||||||| | ||||||||||||||    
T  7479007 ttataacaaatcacgagtttgttaaaataacaactcttgcttgattttctcactttacactttattcactttagagaat 7479085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 585
Target Start/End: Complemental strand, 51672576 - 51672456
Alignment:
Q  465 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 563  Q
    |||||||||||  |||||||||||||||||| ||  |||||| |||||| | ||||||||||| |||| || ||||||||||| | ||||||||||||      
T  51672576 gacaatatcaaccgttaattaacaaattaaa-gtagatattgcagatacatcataacaaatcatgagtttgatacaataacaacctttgattttctcacg 51672478  T
Q  564 ttacacttaactcactttagag 585  Q
    ||||||||||||||||||||||    
T  51672477 ttacacttaactcactttagag 51672456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 585
Target Start/End: Complemental strand, 8296245 - 8296176
Alignment:
Q  516 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagag 585  Q
    ||||||||||| || || ||||||||||||| |||||||||||||| |||| | ||||||||||||||||    
T  8296245 ataacaaatcatgaatgagttacaataacaacccttgattttctcactttataattaactcactttagag 8296176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 566
Target Start/End: Original strand, 18280457 - 18280539
Alignment:
Q  485 aacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 566  Q
    ||||||||||| || |||||||||  ||| | |||||||||||  | | |||||||||||||| |||||||||||||| ||||    
T  18280457 aacaaattaaaggtaaatattgtaagtacatcataacaaatcataaatatgttacaataacaacccttgattttctcacttta 18280539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 36554247 - 36554311
Alignment:
Q  517 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttaga 584  Q
    |||||||||| || | |||||||||||||||   ||||||| |||||||| ||| |||||||||||||    
T  36554247 taacaaatcatgaatttgttacaataacaat---tgattttttcattttatactcaactcactttaga 36554311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 467 - 584
Target Start/End: Complemental strand, 18345814 - 18345696
Alignment:
Q  467 caatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttt 565  Q
    |||||||||  ||||||||| |||| ||| ||  ||||||||| ||| | ||||||||||| |||| |||| ||||||||| |||||||||||  | |||    
T  18345814 caatatcaaccgttaattaataaatgaaaagtatatattgtaggtacgtcataacaaatcatgagtttgttgcaataacaacccttgattttcgtacttt 18345715  T
Q  566 acacttaactcactttaga 584  Q
    | |||| ||||||||||||    
T  18345714 atactttactcactttaga 18345696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 573
Target Start/End: Complemental strand, 11601010 - 11600902
Alignment:
Q  465 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 563  Q
    |||||||||||| ||||||||||| |||||||||  |||||||| |||| |  |||||  | |||||| |||| | ||||||| | || ||||||||| |    
T  11601010 gacaatatcaatcgttaattaacatattaaatgtatatattgtaaatacatcgtaacaggttacgagtttgttgc-ataacaaccgttaattttctcact 11600912  T
Q  564 ttacacttaa 573  Q
    ||||||||||    
T  11600911 ttacacttaa 11600902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 585
Target Start/End: Complemental strand, 41417208 - 41417143
Alignment:
Q  520 caaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagag 585  Q
    |||||||||||| |||||||||||||| |||||||||||| | |||||||||  ||| ||||||||    
T  41417208 caaatcacgagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagag 41417143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 545
Target Start/End: Complemental strand, 26669261 - 26669181
Alignment:
Q  466 acaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataaca 545  Q
    ||||||||||||||||||||| |||||||  || || |||||| |||| | |||| |||||| |||| |||||||||||||    
T  26669261 acaatatcaattgttaattaataaattaagagtgaaaattgtatatacatcataataaatcatgagtttgttacaataaca 26669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 584
Target Start/End: Original strand, 8005056 - 8005127
Alignment:
Q  514 ttataacaaatcacgagtgtgttacaataacaatccttga-ttttctcattttacacttaactcactttaga 584  Q
    ||||||||||||| || | |||||||||||||| |||| | ||||| |||||||| ||| ||||||||||||    
T  8005056 ttataacaaatcatgaatttgttacaataacaacccttaatttttcacattttacgctttactcactttaga 8005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 546
Target Start/End: Original strand, 49137563 - 49137671
Alignment:
Q  439 aacaaatcattttttagcgtaaggtagacaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgtta 537  Q
    ||||| ||||||| |||||| | || || |||||||| | ||||||||||||||||   | |||||||||| | | ||||| |||||||||||| | |||    
T  49137563 aacaattcattttatagcgtcaagtggataatatcaactattaattaacaaattaataataaatattgtaggtgcattatagcaaatcacgagtttatta 49137662  T
Q  538 caataacaa 546  Q
     ||||||||    
T  49137663 aaataacaa 49137671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 585
Target Start/End: Complemental strand, 29391284 - 29391159
Alignment:
Q  457 gtaaggtagacaatatcaattgttaattaacaaattaaatgttaatattgtagatacttataacaaatcacgagtgtgttacaataacaatccttgattt 556  Q
    |||| |||| ||||||||| ||||||||||||||||||| |   ||||||||| |||  || | || | | |||| |||||||||||||| |||  ||||    
T  29391284 gtaaagtaggcaatatcaactgttaattaacaaattaaaggcatatattgtaggtac--atcataatt-atgagtttgttacaataacaaccctcaattt 29391188  T
Q  557 tctcattttacacttaactcactttagag 585  Q
    ||| | ||||||||| |||||||||||||    
T  29391187 tcttactttacactttactcactttagag 29391159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 571
Target Start/End: Original strand, 23499438 - 23499493
Alignment:
Q  516 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacactt 571  Q
    ||||||||||| |||| ||||| |||||||| |||| ||||||||| |||||||||    
T  23499438 ataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacactt 23499493  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 8258948 - 8258904
Alignment:
Q  465 gacaatatcaattgttaattaacaaattaaatgttaatattgtag 509  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||    
T  8258948 gacaatataaattgtcaattaacaaattaaatgtagatattgtag 8258904  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 8272366 - 8272322
Alignment:
Q  465 gacaatatcaattgttaattaacaaattaaatgttaatattgtag 509  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||    
T  8272366 gacaatataaattgtcaattaacaaattaaatgtagatattgtag 8272322  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 585
Target Start/End: Original strand, 9521880 - 9521948
Alignment:
Q  517 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagag 585  Q
    |||||||||| |||| ||||| | | |||| | |||||||||||| ||||||||| | |||||||||||    
T  9521880 taacaaatcatgagtttgttaaattgacaacctttgattttctcactttacactttagtcactttagag 9521948  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 561
Target Start/End: Complemental strand, 36912811 - 36912767
Alignment:
Q  517 taacaaatcacgagtgtgttacaataacaatccttgattttctca 561  Q
    |||||||||| |||| |||||| ||||||||| ||||||||||||    
T  36912811 taacaaatcatgagtttgttacgataacaatctttgattttctca 36912767  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Complemental strand, 39421579 - 39421523
Alignment:
Q  516 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacactta 572  Q
    ||||||||||| |||| ||||| |||||||| | |||||||||||| ||||||||||    
T  39421579 ataacaaatcatgagtttgttaaaataacaacctttgattttctcactttacactta 39421523  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 585
Target Start/End: Original strand, 7840408 - 7840453
Alignment:
Q  539 aataacaatccttgattttctcattttacacttaactcactttagag 585  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||    
T  7840408 aataacaacccttgattttct-actttacacttaactcactttagag 7840453  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 588
Target Start/End: Complemental strand, 13866232 - 13866183
Alignment:
Q  539 aataacaatccttgattttctcattttacacttaactcactttagagaat 588  Q
    |||||||| |||||||||||| | ||||||||| | ||||||||||||||    
T  13866232 aataacaacccttgattttctgactttacactttattcactttagagaat 13866183  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 585
Target Start/End: Complemental strand, 1607839 - 1607793
Alignment:
Q  539 aataacaatccttgattttctcattttacacttaactcactttagag 585  Q
    |||||||||| |||| ||||||||||||| ||| |||||||||||||    
T  1607839 aataacaatcattgaatttctcattttaccctttactcactttagag 1607793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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