View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544-Insertion-4 (Length: 610)
Name: NF5544-Insertion-4
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544-Insertion-4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 86 - 610
Target Start/End: Original strand, 9090614 - 9091138
Alignment:
| Q |
86 |
ttgctttaagttcaaataccaaatagattacattctttttacctgattcaaattgttgtttcgtatttgtttccagtcaccagtgttgttgtcaagtgtt |
185 |
Q |
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| T |
9090614 |
ttgctttaagttcaaataccaaatagattacattctttttacctgattcaaattgttgtttcgtatttgtttccagtcaccagtgttgttgtcaagtgtt |
9090713 |
T |
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| Q |
186 |
agcattgttattgtcaaacctgtatcaatccattaattgaccacttttgttgtgcagtacacttttgggcacctgcatttaagtggggtatcaccgttgc |
285 |
Q |
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| T |
9090714 |
agcattgttattgtcaaacctgtatcaatccattaattgaccacttttgttgtgcagttcacttttgggcacctgcatttaagtggggtatcaccgttgc |
9090813 |
T |
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| Q |
286 |
caatgttgctgattttacaaaaccaactgagaagatttcctatcctcatcaaataagtatgtgcatgcatatagaactgcacgtagtgttatctattgcg |
385 |
Q |
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| T |
9090814 |
caatgttgctgattttacaaaaccaactgagaagatttcctatcctcaccaaataagtatgtgcatgcatatagaactgcacgtagtgttatctattgcg |
9090913 |
T |
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| Q |
386 |
aacttctctctgtcacacacacctgcacgccttttcactcgttattagagatgtaaaagttagttaaatattagttaggagttagttagtccaattggct |
485 |
Q |
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| T |
9090914 |
aacttctctctgtcacacacacctgcacacctttttgctcgttattagagatgtaaaagttagttaaatattagttaggagttagttagtccaattggct |
9091013 |
T |
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| Q |
486 |
atatgatggatattcatcactgaaagggattgaaattgggaagtacatagcgtcagagatattcacgttgggtacaattggaccaactaatctaactaat |
585 |
Q |
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| T |
9091014 |
atatgatggatattcatcactgaaagggattgaaattgggaagtacatagcgtcagagatattcacgttgggtacaattggaccaactaatctaactaat |
9091113 |
T |
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| Q |
586 |
atagtaatatgtaactaacttatac |
610 |
Q |
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| T |
9091114 |
atagtaatatgtaactaacttatac |
9091138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 89 - 355
Target Start/End: Original strand, 9094973 - 9095229
Alignment:
| Q |
89 |
ctttaagttcaaataccaaatagattacattctttttacctgattcaaattgttgtttcgtatttgtttccagtcaccagtgttgttgtcaagtgttagc |
188 |
Q |
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| T |
9094973 |
ctttaagtacaagtaccaaatagattacatt---ttcacctgattcaaactgttgtctc-------tttccagtcaccaatgttgttttcaagtgttaat |
9095062 |
T |
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| Q |
189 |
attgttattgtcaaacctgta-tcaatccattaattgaccacttttgttgtgcagtacacttttgggcacctgcatttaagtggggtatcaccgttgcca |
287 |
Q |
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| T |
9095063 |
attgacattgtgaagc-tgtaatcgatgtataaattgaccacttattttgtgcagttcacttttgggcccctacatttaagtggggtatcagcattgcca |
9095161 |
T |
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| Q |
288 |
atgttgctgattttacaaaaccaactgagaagatttcctatcctcatcaaataagtatgtgcatgcat |
355 |
Q |
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| T |
9095162 |
atattgctgattttgcaaaaccacctgagaagctttcctatcctcaacaaataggtatgcgcatgcat |
9095229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 9090583 - 9090617
Alignment:
| Q |
8 |
attatgttgaatcaacggccgtgattaactattgc |
42 |
Q |
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| T |
9090583 |
attatgttgaattaacggccgtgattaactattgc |
9090617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 7363064 - 7363023
Alignment:
| Q |
431 |
tagagatgtaaaagttagttaaatattagttaggagttagtt |
472 |
Q |
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| T |
7363064 |
tagagatataaaagttaattacatattagttaggagttagtt |
7363023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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